Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq120 87.8 4e-14 seq496 78.8 2e-11 >seq120 Length=504886 Score = 87.8 bits (96), Expect = 4e-14 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469 |||| | ||||||||||||||| ||||||||||||||||||||||| | ||||||| Sbjct 68588 ACGATGCACTCTGCATCCTCCCCCTCAACGTGGTCAACGAGAAGATCTATGTCTTCCTCT 68529 Query 3470 GGTTCTGGTTC 3480 ||||||||||| Sbjct 68528 GGTTCTGGTTC 68518 >seq496 Length=56699 Score = 78.8 bits (86), Expect = 2e-11 Identities = 102/141 (72%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 |||||| || |||||||| ||||||||||| | | | || | ||| || |||||| | Sbjct 44676 ATGTACATTCCACAAATATGGTCCTTCGGGAACTGTTCAGAAGTTCGATGGGCTCTGCGT 44617 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGT 3485 || ||| ||| | ||||| |||||||| || | || || |||||||||||| | | Sbjct 44616 ACTACCGCTTAACATCGTCAATGAGAAGATTTATGTATTTCTGTGGTTCTGGTTCATCAT 44557 Query 3486 GCTAGCCATCATCAGCGGTAT 3506 ||| | || | || ||||| Sbjct 44556 ACTATCAATTTTGAGTGGTAT 44536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479263582500