Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq445 230 2e-55 seq221 132 4e-26 seq64 114 1e-20 seq131 107 2e-18 >seq445 Length=79264 Score = 230 bits (254), Expect = 2e-55 Identities = 383/541 (71%), Gaps = 13/541 (2%) Strand=Plus/Minus Query 20401 GAAAACAATAAACGTTTCGAG-AAGCGTACCGATAAAATCATTGCTGCATATTTTGTAGA 20459 ||||| || |||| ||| | || ||| | | |||| || ||| || || || || || Sbjct 27758 GAAAAGAACAAACCATTCAAACAAACGT-CTGGTAAAGTCGTTGGAGCTTACTTCGTTGA 27700 Query 20460 ATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTACCCGTTCCCAATTTGTCTCA 20519 |||||| || || || || |||| |||||||| || || |||| ||| | | || Sbjct 27699 ATGGGGTGTATACCCCAGGAAATTCCCCGTCGATCGTGTGCCGATTCCAAATCTCACACA 27640 Query 20520 TCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTATCAACGACGCGTTAAAGTT 20579 ||| || || || || | || || || || || ||||| || || ||| ||||| Sbjct 27639 TCTTCTTTACGGTTTCATACCGATATGTGGGGGTGATGGCATTAATGACAGTTTAAAAGA 27580 Query 20580 GTCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGCGCGGGCCGAGATAATTTTAA 20639 | || ||| |||| | ||| | || ||||| ||| || || || ||||||| Sbjct 27579 AATCGAG--GGA-AGTTTTCAAGCACTACAGCGTTCATGCAGTGGTCGGGAAGATTTTAA 27523 Query 20640 AGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCACAAAAAGGAGTATCCTCTTG 20699 ||| |||| || ||||||||||| ||| |||||||||| |||| ||| ||||||| || Sbjct 27522 GGTTTCCATCCATGATCCTTGGGCTGCTTTACAGAAACCTCAAAGAGGTCTATCCTCCTG 27463 Query 20700 GAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCAACGAAACTGGCGTATCCTCA 20759 ||| ||||| || ||||| || |||||||| |||||| || ||||| || | || | Sbjct 27462 GAATGAACCTTATAAAGGCAATTTTGGTCAATTGATGTCATTGAAACAAGCTAAACCAGA 27403 Query 20760 TCTTAAAG-TGCTACCTTCGATCGGCGGGTGGACTTTATCCGATCCGTTTTATCATATGC 20818 ||| ||| | |||| || || || |||||||||||| | ||||| ||| || | | | Sbjct 27402 -CTTGAAGATTTTACCATCAATTGGTGGGTGGACTTTAGCTGATCC-TTTCTTCTTCTTC 27345 Query 20819 AC-GATCCGATCGTA--CGCCAAGTTTTCATCGATTCTGTGGAAGAGTTTTTGTTGACGT 20875 || ||| || ||| || || || | || ||||| |||| || | || || | Sbjct 27344 ACTGATAAGA--GTAAGCGACAGCGATTTGTAGAATCTGTTAAAGATTTCCTTTTAACCT 27287 Query 20876 GGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCCGGGAGGCAAAGGTGCGAATC 20935 |||||||||||||||| ||||| || ||||||||||| || || || |||||||| || | Sbjct 27286 GGAAATTCTTTGACGGTGTTGATATTGACTGGGAGTTCCCTGGTGGTAAAGGTGCTAACC 27227 Query 20936 C 20936 | Sbjct 27226 C 27226 >seq221 Length=486136 Score = 132 bits (146), Expect = 4e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 114147 TTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTG 114206 || ||||| ||||| | || | | ||||||||| | ||||| || || || |||||| Sbjct 78335 TTTCAAATTCCGCCTCTGAGACGGAGAACTAAATGCAAGGTAGACTCCTTCTGGATGTTG 78394 Query 114207 TAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGG 114266 || || | ||||| ||||| || || |||||||| |||| |||||||||||| Sbjct 78395 TAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGG 78454 Query 114267 TCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTG 114326 || ||||| |||||||| ||||| || ||| |||| | || | |||||||| | Sbjct 78455 TCTGGAGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCTATGGTGTCGGAG 78514 Query 114327 GATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||||| || | ||| | |||||||| |||| || || || || |||||||| Sbjct 78515 GGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | |||||| | ||| | ||||| ||||||||||||||||||||| Sbjct 79253 ATACCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCG 79312 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| || || | |||||| || || |||| | || || || || || Sbjct 79313 GAAAGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGT 79372 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || || |||||||| ||| ||| | |||| | | ||||| || || | | ||| Sbjct 79373 GGGATTCCCTCTTTGTCTTGAAT-TTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTC 79431 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||| || | || || || || || |||||||||||||||||||| Sbjct 79432 GACTTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCAT 79482 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | || | || | ||| | || ||||| || || |||||||| || Sbjct 78569 ATACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCA 78628 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||| || || |||||||| |||| |||||||||||||| ||| Sbjct 78629 GAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGA 78688 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| || || ||||| | |||| ||||| | | |||| Sbjct 78689 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCG 78748 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| |||| || || || || |||||||| Sbjct 78749 ACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | || | || | ||| | || ||||| || || |||||||| || Sbjct 78797 ATACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCA 78856 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||| || || |||||||| |||| |||||||||||||| ||| Sbjct 78857 GAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGA 78916 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| || || ||||| | |||| ||||| | | |||| Sbjct 78917 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCG 78976 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| |||| || || || || |||||||| Sbjct 78977 ACTTCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | |||||||| || || |||||||| ||| Sbjct 79025 ATACCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCG 79084 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| |||||| | ||||||||||||| | || | ||| ||||| || || Sbjct 79085 GAGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGG 79144 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| || || || | | ||||| || || | | || Sbjct 79145 GGGATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCT 79204 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || ||||| ||||| |||||||| Sbjct 79205 ACCTCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 >seq64 Length=1946208 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||||||| || | ||| | |||||||| |||||||| ||||| ||| | |||||| Sbjct 785710 AGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGATAAGGTACGA 785769 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | |||||| |||||| | || | ||||| || || || ||||| ||||| Sbjct 785770 CCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGAATACCTTCC 785829 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||||| |||| | || | |||||| | || || || || | ||| Sbjct 785830 TTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACCTCTAGGGTA 785889 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| || || || || || || ||||||||||| Sbjct 785890 ATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCAT 785927 >seq131 Length=856804 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||||||||||||||| || || || |||||| | || || || Sbjct 308827 GTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCG 308886 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||| ||||| ||||| || ||| | ||| Sbjct 308887 GCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGAT-TTTAGCTTT 308945 Query 114306 AGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | || | ||||||| || ||| || |||| || | ||||||||| || | || Sbjct 308946 AACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTGCCAGTTAAGGT 309005 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| |||||||||||||| Sbjct 309006 TTTCACAAAAATCTGCAT 309023 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || || || | ||| | ||||| || | || ||||| ||||||||||| ||||| | Sbjct 307885 CCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGAC 307944 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || |||||| | || || || || |||| || | ||| ||||| || ||| Sbjct 307945 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308004 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| ||||| ||||| ||| | | || | ||||||| || ||| || Sbjct 308005 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308064 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | |||||| || || | ||||||||||| || ||||| Sbjct 308065 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||||||||||||||| || || || |||||| | || || || Sbjct 308143 GTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCG 308202 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 308203 GCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTA 308262 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| || ||| || |||| || | |||||| || || | ||| Sbjct 308263 ACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTT 308322 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| || ||||| Sbjct 308323 TTTACAAAGATTTGCAT 308339 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||||||||||||||| || || || |||||| | || || || Sbjct 308371 GTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCG 308430 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 308431 GCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTA 308490 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| || ||| || |||| || | |||||| || || | ||| Sbjct 308491 ACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTT 308550 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| || ||||| Sbjct 308551 TTTACAAAGATTTGCAT 308567 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||||||||||||||| || || || |||||| | || || || Sbjct 308599 GTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCG 308658 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 308659 GCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTA 308718 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| || ||| || |||| || | |||||| || || | ||| Sbjct 308719 ACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTT 308778 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| || ||||| Sbjct 308779 TTTACAAAGATTTGCAT 308795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420106775506740