Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq149 91.5 3e-13 >seq149 Length=636072 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || ||||| | ||||| | ||||||||||| || ||||| || | Sbjct 239239 CTGTTCAATGCTATTGAGACTTTACCCTGTGTAAAGAAGAAGGCAGATTGGGCCCTTCAG 239298 Query 42669 TGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||| | ||| ||| || || || || ||| | | || || ||| | || || || Sbjct 239299 TGGATTGCCAGT-AAGACGGCCACATTTGGAGAGCGCATTGTTGCATTTGCTGCTGTTGA 239357 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGA 42786 || || |||||||| || || || || ||||||||| | ||| ||| |||| || | Sbjct 239358 AGGGATTTTCTTCTCTGGTAGTTTTGCTTCTATCTTCTGGATGAAGAAGAGAGGTCTC-A 239416 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||| | || ||| || |||||||| Sbjct 239417 TGCCCGGTTTGACTTTCAGTAATGAACTCAT 239447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944275516125200