Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq318 152 4e-32 seq221 104 2e-17 >seq318 Length=176241 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 12356 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 12415 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 12416 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 12453 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 12356 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 12415 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 12416 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 12453 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 114145 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 114195 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 12294 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 12345 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 115342 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 115392 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 12294 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 12345 >seq221 Length=486136 Score = 104 bits (114), Expect = 2e-17 Identities = 177/250 (71%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || |||| || |||||||| || ||| || |||||||||||||| | Sbjct 79255 ACCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATC-GG 79313 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || |||| |||||||| || || ||||| |||| || |||||||| | Sbjct 79314 AAAGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTG 79373 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCG 34077 | | | |||||||| | | | |||| |||| | || | | |||| | || |||| Sbjct 79374 GGATTCCCTCTTTGT-CTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCG 79432 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAATATG 34137 ||| | ||||| || ||||| || || ||||| ||||| || |||| |||| |||| Sbjct 79433 ACTTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCA-TTTTGATATC 79491 Query 34138 TGACAAACGG 34147 || |||||| Sbjct 79492 TGTAAAACGG 79501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397036292526790