Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq221 145 2e-29 seq131 105 2e-17 seq64 104 6e-17 >seq221 Length=486136 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||||||||| | || ||| || ||||| || ||||||| | Sbjct 79028 CCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAG 79087 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || |||||||||||||| || ||||| |||| ||| ||||| |||| Sbjct 79088 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTG---ATCTGGG 79144 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || || |||||||| || ||||||||||| |||| ||| | ||| Sbjct 79145 GGGATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCT 79204 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||| || || || || || || || || || || |||||||| Sbjct 79205 ACCTCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | || ||||||||||| | || ||| || ||||| || ||||| | Sbjct 78572 CCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAA 78631 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || || || || ||||||||||||||||| ||| Sbjct 78632 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGG 78691 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || |||||||||||||| || || || || | || | ||| ||| Sbjct 78692 ATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACT 78751 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||| ||||||||||| |||||||| Sbjct 78752 TCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 136 bits (150), Expect = 9e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | | || ||||||| || |||||||| || || || |||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || |||||||||||||| ||||||| || || ||| |||| Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| ||||| || || ||||| ||||| || ||||| |||| ||| | ||| ||| Sbjct 79376 ATTCCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACT 79435 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 || | || || ||||| || || || || || || || ||||||||| || ||| Sbjct 79436 TCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTTGATAT 79490 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | || ||||||||||| | || ||| || ||||| || ||||| | Sbjct 78800 CCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAA 78859 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || || || || ||||||||||||||||| ||| Sbjct 78860 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGG 78919 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || |||||||||||||| || || || || | || | ||| ||| Sbjct 78920 ATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACT 78979 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || || |||| ||||||||||| |||||||| Sbjct 78980 TCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || || |||||||| | || || || || ||| Sbjct 78380 TCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAG 78439 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||||||||||||| ||| ||||| ||||| || || |||||||| || || || Sbjct 78440 ATCAGACGCTGTTG---GTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTTACA 78496 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || ||||| | ||| | ||| ||||| || ||||| || || || |||| |||||| Sbjct 78497 TTCTCTATGGTGTCGGAGGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTG 78556 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 78557 ACGAAGATCTGCAT 78570 >seq131 Length=856804 Score = 105 bits (116), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || || || | || |||||||| |||||||| || || || || || Sbjct 308832 TTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAA 308891 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| || | ||| || |||||| |||||||| || ||||||||||| ||||| || Sbjct 308892 GATAAGTCTCTGCTGG---TCTGGGGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTAAC 308948 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | ||| | ||| ||||| | |||||||| || || || | || || Sbjct 308949 ATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTGCCAGTTAAGGTTTT 309008 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 309009 CACAAAAATCTGCAT 309023 >seq64 Length=1946208 Score = 104 bits (114), Expect = 6e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | || ||||| | || ||| ||||| ||||| ||||||| | || || Sbjct 785710 AGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGATAAGGTACGA 785769 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| ||||||||||| ||||| |||| ||||| ||| ||| || ||||| Sbjct 785770 CCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGAATACCTTCC 785829 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || || ||||| || || || || || || || | || | || || || || || Sbjct 785830 TTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACCTCTAGGGTA 785889 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || || || || ||||| ||||| ||||||||| || Sbjct 785890 ATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTTG 785931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179572858232810