Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq219 131 2e-25 seq54 82.4 9e-11 >seq219 Length=603346 Score = 131 bits (144), Expect = 2e-25 Identities = 438/672 (65%), Gaps = 20/672 (3%) Strand=Plus/Plus Query 113960 GGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCC 114019 || ||||| | ||||| || || | ||||| ||||||||||| |||||||| || || Sbjct 377541 GGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTGGGCATTGGCGCT 377600 Query 114020 ATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGT 114077 | |||||| ||||| ||||| | ||| | ||| ||| || || || |||| | Sbjct 377601 AATAGAAGGGAATTACGAAGACCATGCTTTGC--AATTTTTTCTTTAAGAGCAGCCCAAT 377658 Query 114078 CGTAGTTGAGCTTTGTCTCCCCC-TGCCACATATCAAACTGGAGGATACCTTGGGAGGCT 114136 | | || || || | | ||||||||| |||| || || |||||| || Sbjct 377659 CCCAAA-GATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCCCTTGGCTAGCA 377717 Query 114137 GGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG 114196 || |||||| | || ||| || || ||| || || || | || |||||| Sbjct 377718 GGACTTCCCTCGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCACAACTTGCCTCG 377777 Query 114197 AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAA 114256 || || ||| ||| || || ||||| || | ||| | | | |||| || Sbjct 377778 AGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATTGCCTTCTCACTC 377837 Query 114257 TCAAACGCGAGTCGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAAT 114315 ||| ||| | || || || || |||| ||||||| | || || || |||| ||||| Sbjct 377838 TCATACGGTAATCT-CATAAGAACAAATGCATCCGCTAATCCCTGAACGCCGATACCAAT 377896 Query 114316 TGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATC 114372 || | ||| ||||||| || ||| || |||| || |||||||| || ||| Sbjct 377897 GGGCCTGTGTTTCATATTCGAGTTTTTCGC---CTCCGGTACAGGATAAAAGTTGACATC 377953 Query 114373 GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC 114432 |||| | || ||||||| || ||| || || | ||| | || |||| | |||| Sbjct 377954 AATAATTTTGTTCAGATTTTGTGTAACAGTTTTAGTTACTTCTTTCAGTTTTTTGAAATC 378013 Query 114433 AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACAC 114492 || | | | |||| ||| || || || || ||||| || ||||| ||||| Sbjct 378014 GAATTTTT---TGTTTTCA---ACAAACATATTTAGAGCTATTGAGGCGAGATTGCACAC 378067 Query 114493 AGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAAT 114552 | |||||| | || || || | |||||| ||||||||||| | || || Sbjct 378068 GGCAACCTCATCTTCCGATGTATATTCAACAATTTCAGTACACAAATTACTGCATTTGAT 378127 Query 114553 GGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGG 114612 || || | || |||||||| ||| ||||||| ||||| ||||| ||||||||||| Sbjct 378128 AGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCATGTATGG 378187 Query 114613 CGTCCCCGTCTC 114624 || || || || Sbjct 378188 AGTACCAGTTTC 378199 >seq54 Length=946213 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 10959 TACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTT 11018 |||| || || ||||||||||||||||| | ||| || ||| || || || || | Sbjct 12946 TACCAACAGCATCAATTTCATCGATGAACAGGATGCATGGTGCATGTTTCCGAGCCATAG 12887 Query 11019 CAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGG 11078 ||| ||||| || || || | ||| ||||| |||||||| |||| ||| | | Sbjct 12886 AAAACATATCACGAACCCTTGAAGGACCAACACCGACAAACATCTCCAAAAATTCAGAAC 12827 Query 11079 CGGA-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11137 | || ||| | ||||| || ||||||| ||| || || ||||| ||||| || || Sbjct 12826 CAGAGACAGT-TATGAAAGGAACGTTGGCTTCGCCGGCTGTGGCTTTAGCGAGAAGTGTT 12768 Query 11138 TTCCCCGTCCCAGG 11151 || || || ||||| Sbjct 12767 TTACCTGTACCAGG 12754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597313315966600