Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq219 170 2e-37 seq221 125 7e-24 seq445 120 3e-22 seq131 89.7 5e-13 seq64 82.4 8e-11 >seq219 Length=603346 Score = 170 bits (188), Expect = 2e-37 Identities = 487/743 (66%), Gaps = 18/743 (2%) Strand=Plus/Plus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTC----AAATATACATTGCTAGT 153082 |||||||||||||||||||| || | ||| |||||||| |||| | ||| | || Sbjct 377481 TGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATGT---TTGAT-GT 377536 Query 153083 GAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTA 153142 ||||||||||| ||||| ||||| |||||||||||||| |||| || || ||||| Sbjct 377537 AAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTGGGCATTGG 377596 Query 153143 CGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCA 153202 ||| | | | ||||| || | || ||| | ||| | || || | || ||| Sbjct 377597 CGCTAATAGAAGGGAATTACGAAGACCATGCTTTGCAATTTTTTCTTTAAGAGCAGCCCA 377656 Query 153203 ATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGC 153262 |||||| || | | ||||| ||||||||| |||||||||| | ||| | || || Sbjct 377657 ATCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCCCTTGGCTAGC 377716 Query 153263 GGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTC 153322 ||||| || | | || ||||| || || | | ||| | || || || ||||| Sbjct 377717 AGGACTTCCCTCGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCACAACTTGCCTC 377776 Query 153323 GAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCT 153382 |||||| || || || || ||||| ||||| | ||| || | || | || || Sbjct 377777 GAGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATTGCCTTCTCACT 377836 Query 153383 CTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGAT 153442 ||| ||||| | | || || ||||| || || || | ||||| | |||| || || Sbjct 377837 CTCATACGGTAATCTCATAAGAACAAATGCATCCGCTAATCCCTGAACGCCGATACCAAT 377896 Query 153443 GGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGAT 153502 ||| | || ||| || | |||| || || ||||| ||| ||| || Sbjct 377897 GGGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATAAAAGTTGACATCAAT 377956 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 ||||||||| || || | || |||||||| | || ||||| | |||||| | Sbjct 377957 AATTTTGTTCAGATTTTGTGTAACAGTTTTAGTTACTTCTTTCAGTTTTTTGAAATCGAA 378016 Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 | | | || || | ||| ||| | || || || || ||||| || ||||| Sbjct 378017 TTTTTTGTTTTCAAC----AAACAT--ATTTAGAGCTATTGAGGCGAGATTGCACACGGC 378070 Query 153623 CGTCTCTTCGGCGTCGCTG--TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATG 153680 ||| || | || || || | || || || | || | || |||||||| || Sbjct 378071 AACCTCATCTTC--CGATGTATATTCAACAATTTCAGTACACAAATTACTGCATTTGATA 378128 Query 153681 ACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 153740 || | ||||| ||||| ||||| | || || || |||||| | |||||||| || Sbjct 378129 GTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCATGTATGGA 378188 Query 153741 CCGCCGGTCTCGACTTGCGTTTC 153763 || || |||||||||| ||| Sbjct 378189 GTACCAGTTTCGACTTGCGCTTC 378211 >seq221 Length=486136 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| | ||| | ||||||||| | | | |||||||| || ||||||||||| Sbjct 78344 CCGCCTCTGAGACGGAGAACTAAATGCAAGGTAGACTCCTTCTGGATGTTGTAGTCAGAA 78403 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || || || ||||| | | |||| |||||||||||||| ||||| Sbjct 78404 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCTGGAGGG 78463 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||||||| |||| | || | |||||||| | || || Sbjct 78464 ATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCTATGGTGTCGGAGGGTTCGACT 78523 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| || || || || |||||||| Sbjct 78524 TCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||| | ||| | | ||||| |||||||||||||| ||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| | |||||| || | | |||| | || || || || || || Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| |||| | ||||| | ||| | || || | | || || Sbjct 79376 ATTCCCTCTTTGTC-TTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGAC 79434 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || |||||||||||||||||||| Sbjct 79435 TTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCAT 79482 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| || | || | ||| | | || ||||| || ||||||||||| Sbjct 78572 CCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAA 78631 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || || || ||||| | | |||| |||||||||||||| ||||| Sbjct 78632 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGG 78691 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| |||||| ||||| | || | ||||| | | || || Sbjct 78692 ATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACT 78751 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| || || || || |||||||| Sbjct 78752 TCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| || | || | ||| | | || ||||| || ||||||||||| Sbjct 78800 CCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAA 78859 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || || || ||||| | | |||| |||||||||||||| ||||| Sbjct 78860 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGG 78919 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| |||||| ||||| | || | ||||| | | || || Sbjct 78920 ATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACT 78979 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| || || || || |||||||| Sbjct 78980 TCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | ||| | | || ||||| || |||||||||||| Sbjct 79028 CCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAG 79087 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||||||||| | | || | ||| ||||| || || || Sbjct 79088 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 79147 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || | | ||| | || || | | ||| ||| Sbjct 79148 ATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCTACC 79207 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | |||||||| || || ||||| ||||| |||||||| Sbjct 79208 TCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 >seq445 Length=79264 Score = 120 bits (132), Expect = 3e-22 Identities = 385/592 (65%), Gaps = 4/592 (1%) Strand=Plus/Minus Query 27914 GCCGACACCGACGGTTCTCATCTCGCGCCGCTAGTATACGATTTCCTCGAAAACAACAAG 27973 || ||||||||||| |||||| | ||| ||| ||| | ||||| ||||| Sbjct 27806 GCTGACACCGACGGAAGTCATCTTCCACCGTTAGAATATTCAATGGGAGAAAAGAACAAA 27747 Query 27974 CGCTT-TGATAAACATCCCGAGAAAATTGTGGCCGCCTATTTCGTCGAGTGGGGCGTGTA 28032 | || | |||| | | | ||| | || | || || ||||| || ||||| || || Sbjct 27746 CCATTCAAACAAACGT-CTGGTAAAGTCGTTGGAGCTTACTTCGTTGAATGGGGTGTATA 27688 Query 28033 TCTGCGGCAGTTTCCCGTCGACAAAGTGCCCGCGCCCAACCTGTCGCACTTGCTGTACGG 28092 | || | || |||||||| ||||| || || || | || | || ||||| Sbjct 27687 CCCCAGGAAATTCCCCGTCGATCGTGTGCCGATTCCAAATCTCACACATCTTCTTTACGG 27628 Query 28093 TTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACGCCCTCAAGACCGTTCCCGGCAG 28152 |||| | |||||||| || || || ||||| || ||| | || | || || Sbjct 27627 TTTCATACCGATATGTGGGGGTGATGGCATTAATGACAGTTTAAAAGAAATCGAGGGAAG 27568 Query 28153 TTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCCGACTTCAAGGTGACGATCCACGA 28212 ||| | || || ||||| || ||| || || | || || ||||| | ||||| || Sbjct 27567 TTTTCAAGCACTACAGCGTTCATGCAGTGGTCGGGAAGATTTTAAGGTTTCCATCCATGA 27508 Query 28213 TCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGTCTCTACGTGGAACGAGCCGTACAA 28272 ||| ||||| || | ||||| || |||| || | || | ||||| || || || || Sbjct 27507 TCCTTGGGCTGCTTTACAGAAACCTCAAAGAGGTCTATCCTCCTGGAATGAACCTTATAA 27448 Query 28273 AGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCCAATCCGCACTTGAAGGTGCTGGC 28332 |||||| ||||| ||||||||| | ||| ||| || || |||||||| | | | Sbjct 27447 AGGCAATTTTGGTCAATTGATGTCATTGAAACAAGCTAAACCAGACTTGAAGATTTTACC 27388 Query 28333 GTCGATCGGCGGCTGGACGCTGTCGGACCCATTCTTTCACATGCAC-GACGCGACCGTGC 28391 || || || || ||||| | | || || ||| ||| | ||| || || || Sbjct 27387 ATCAATTGGTGGGTGGACTTTAGCTGATCCTTTC-TTCTTCTTCACTGATAAGAGTAAGC 27329 Query 28392 GCCAAACGTTCATCGATTCCGTCGTGGACTTTCTGCTGACCTGGAAGTTCTTCGACGGCG 28451 | || || | || || || || || || | |||||||| ||||| ||||| | Sbjct 27328 GACAGCGATTTGTAGAATCTGTTAAAGATTTCCTTTTAACCTGGAAATTCTTTGACGGTG 27269 Query 28452 TCGACATCGATTGGGAGTTTCCGGGCGGCAAAGGAGCCAATCCCGATGTCGG 28503 | || || || |||||||| || || || ||||| || || || || |||| Sbjct 27268 TTGATATTGACTGGGAGTTCCCTGGTGGTAAAGGTGCTAACCCAGACCTCGG 27217 >seq131 Length=856804 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | || || || | | |||| ||||||||||||||||| || | Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | || || |||| | |||| || | ||| ||||| || || Sbjct 308857 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308916 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| ||| | | || | ||||||| | || || Sbjct 308917 ATTCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308976 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||| ||||| | ||||| |||||||||||||| Sbjct 308977 TCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCAT 309023 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||||||| | | ||||| || | | |||| |||||||||||||| || || | Sbjct 307885 CCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGAC 307944 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | || || |||| | |||| || | ||| ||||| || || Sbjct 307945 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308004 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || ||| | | || | ||||||| | || || Sbjct 308005 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308064 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||| ||||| | ||||||||||| || ||||| Sbjct 308065 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 >seq64 Length=1946208 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | || ||||||||||| ||||||||| | ||||| || Sbjct 785715 CAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGATAAGGTACGACCATC 785774 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || | |||||| || | | || | ||||| || || || || |||||||| ||||| Sbjct 785775 TTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGAATACCTTCCTTGTC 785834 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | || | |||||| | | ||| ||||| | || | || Sbjct 785835 TTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACCTCTAGGGTAATGGT 785894 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || || || || || ||||||||||| Sbjct 785895 TTTACCCGTTAGGGTCTTAACGAAAATCTGCAT 785927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496228933304400