Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq221 143 2e-29 seq64 116 3e-21 seq131 107 1e-18 >seq221 Length=486136 Score = 143 bits (158), Expect = 2e-29 Identities = 165/221 (75%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| | |||||| ||||| |||||||| |||||||||||| ||| | | |||| Sbjct 79271 AAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCGTCC 79330 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | ||||| || || || || ||| ||||| || ||||| Sbjct 79331 TCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTGTCT 79390 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||||| ||| ||| |||| |||||||| | ||| || || || || ||||| Sbjct 79391 TGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTATGGTC 79450 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAT 15185 || || || || |||||||||||||| ||||| ||||| || Sbjct 79451 TTTCCAGTAAGCGTTTTTACAAAAATCTGCAT-TTTGATAT 79490 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || | ||| || ||||| || || || |||||||| ||| | Sbjct 79028 CCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAG 79087 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| |||||| | |||||||| ||||| || || Sbjct 79088 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 79147 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||||| || || |||| |||||||| | ||||| Sbjct 79148 ATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCTACC 79207 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || |||||||| || || ||||| ||||| || |||||| Sbjct 79208 TCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCATA 79255 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||||| || || | ||| || || || || || || |||||||| || Sbjct 78800 CCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAA 78859 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | || || ||||| | |||| ||||||||||||| || Sbjct 78860 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGG 78919 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||| ||||||| | || || || || | ||| || Sbjct 78920 ATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACT 78979 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||||| |||||||| || |||| || || || || || |||||| Sbjct 78980 TCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 79027 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||||||||| | |||||| || || || |||||||| || || | | ||||||| Sbjct 78361 AACTAAATGCAAGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTC 78420 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || ||||| | |||| |||||||||||| || || ||||||||||| Sbjct 78421 CAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTG 78480 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| |||||| | ||||| || ||| ||| || |||| ||| |||||||| Sbjct 78481 GATTTTTGCCTTTACATTCTCTATGGTGTCGGAGGGTTCGACTTCTAGGGTGATGGTTTT 78540 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || || || |||||| Sbjct 78541 GCCAGTCAAGGTCTTGACGAAGATCTGCATA 78571 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||||| || || | ||| || || || || || || |||||||| || Sbjct 78572 CCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAA 78631 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | || || ||||| | |||| ||||||||||||| || Sbjct 78632 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGG 78691 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||| ||||||| | || || || || | ||| || Sbjct 78692 ATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACT 78751 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| |||||||| || |||| || || || || || |||||| Sbjct 78752 TCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 78799 >seq64 Length=1946208 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| || || | ||| | |||||| || ||||| || ||||| ||| | Sbjct 785701 CCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCG--G 785758 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| |||||||| |||||| ||||||| ||||| || || || Sbjct 785759 ATAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTG 785818 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| || ||| |||||| | || || || || || | Sbjct 785819 GAATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAA 785878 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | |||| ||||||||||||||| || || || || || ||||| ||||| || Sbjct 785879 CCTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTT 785930 >seq131 Length=856804 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||||||||||| ||||| || ||||| || || ||||| ||||| ||||| Sbjct 307885 CCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGAC 307944 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | |||||||| || ||||| || | || | | ||| ||||| ||| Sbjct 307945 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308004 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || || ||| ||| | || || || ||| ||| || Sbjct 308005 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308064 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| || || | ||||||||||| |||||||| Sbjct 308065 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| || || || ||||| || || ||||| ||||||||||| Sbjct 308113 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308172 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | |||||||| || ||||| || | || | | ||| ||||| ||| Sbjct 308173 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308232 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || || ||| ||| | || || || ||| ||| || Sbjct 308233 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308292 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| || || | ||||||||||| |||||||| Sbjct 308293 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| || || || ||||| || || ||||| ||||||||||| Sbjct 308341 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308400 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | |||||||| || ||||| || | || | | ||| ||||| ||| Sbjct 308401 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308460 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || || ||| ||| | || || || ||| ||| || Sbjct 308461 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308520 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| || || | ||||||||||| |||||||| Sbjct 308521 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| || || || ||||| || || ||||| ||||||||||| Sbjct 308569 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308628 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | |||||||| || ||||| || | || | | ||| ||||| ||| Sbjct 308629 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308688 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || || ||| ||| | || || || ||| ||| || Sbjct 308689 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308748 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| || || | ||||||||||| |||||||| Sbjct 308749 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| || || || ||||| || || ||||| ||||||||||| Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | |||||||| || ||||| || | || | | ||| ||||| ||| Sbjct 308857 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308916 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||||| ||| ||| | || || || ||| ||| || Sbjct 308917 ATTCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308976 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || ||||| || || | ||||| |||||||| ||||| || Sbjct 308977 TCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTT 309026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357368500917575