Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq445 167 2e-36 seq221 120 3e-22 seq64 120 3e-22 seq484 105 6e-18 seq131 98.7 9e-16 seq10 98.7 9e-16 seq40 89.7 5e-13 seq1478 86.0 6e-12 seq269 84.2 2e-11 seq90 82.4 7e-11 >seq445 Length=79264 Score = 167 bits (184), Expect = 2e-36 Identities = 330/486 (68%), Gaps = 2/486 (0%) Strand=Plus/Minus Query 22322 TATTTTGTCGAGTGGGGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCG 22381 || || || || ||||| || |||| | | || |||| ||| ||||| | || Sbjct 27710 TACTTCGTTGAATGGGGTGTATACCCCAGGAAATTCCCCGTCGATCGTGTGCCGATTCCA 27651 Query 22382 AACCTGTCGCATTTGCTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGAC 22441 || || | ||| | || ||||||||| | || ||||| || || || ||||| || ||| Sbjct 27650 AATCTCACACATCTTCTTTACGGTTTCATACCGATATGTGGGGGTGATGGCATTAATGAC 27591 Query 22442 GCCCTGAAAACGGTGCCGGGAAGCTTCGAGGCGTTGCAACGGTCGTGCGTCAATAGAGCC 22501 | ||| | |||||| || | || | || || || ||| | | | Sbjct 27590 AGTTTAAAAGAAATCGAGGGAAGTTTTCAAGCACTACAGCGTTCATGCAGTGGTCGGGAA 27531 Query 22502 GATTTCAAGGTGACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTG 22561 ||||| ||||| |||| || ||||| ||||| || |||| |||||||||| ||| | Sbjct 27530 GATTTTAAGGTTTCCATCCATGATCCTTGGGCTGCTTTACAGAAACCTCAAAGAGGTCTA 27471 Query 22562 TCGTCGTGGAACGAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCG 22621 || || ||||| ||||| || |||||||| ||||||||||||||| || ||||| ||| Sbjct 27470 TCCTCCTGGAATGAACCTTATAAAGGCAATTTTGGTCAATTGATGTCATTGAAACAAGCT 27411 Query 22622 AATCCTCATCTCAAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTAT 22681 || || | | || | ||| |||| || || || ||||| || | ||||| ||| | Sbjct 27410 AAACCAGACTTGAAGATTTTACCATCAATTGGTGGGTGGACTTTAGCTGATCC-TTTCTT 27352 Query 22682 CATATGCAC-GACAAGAACGTGAGACAAATTTTCATCGATTCGGTGGAAGAGTATTTGAT 22740 | | | ||| || |||| | |||| || | || || || |||| | | | Sbjct 27351 CTTCTTCACTGATAAGAGTAAGCGACAGCGATTTGTAGAATCTGTTAAAGATTTCCTTTT 27292 Query 22741 CACGTGGAAGTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGC 22800 || ||||| ||||||||||| || |||||||| |||||||| || || || || || || Sbjct 27291 AACCTGGAAATTCTTTGACGGTGTTGATATTGACTGGGAGTTCCCTGGTGGTAAAGGTGC 27232 Query 22801 GAATCC 22806 || || Sbjct 27231 TAACCC 27226 >seq221 Length=486136 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | ||||| || | ||| | ||||||||||||||||| ||||||||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | |||||||| || |||||||||| |||||||| || || Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| |||| | ||| ||| || || | | ||| | || |||| | ||||| Sbjct 79376 ATTCCCTCTTTGT-CTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGAC 79434 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || || || |||||||||||||||||||| Sbjct 79435 TTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCAT 79482 >seq64 Length=1946208 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || |||||| | ||| | ||||| || |||||||||||||| ||| | || ||| Sbjct 785712 TCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGATAAGGTACGACC 785771 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || | |||||||||||| | ||||||||||||||||| || || || || ||||| Sbjct 785772 ATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGAATACCTTCCTT 785831 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||| | | |||| |||||| | ||| || || | ||| | Sbjct 785832 GTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACCTCTAGGGTAAT 785891 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || || || || || ||||||||||| Sbjct 785892 GGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCAT 785927 >seq484 Length=61757 Score = 105 bits (116), Expect = 6e-18 Identities = 95/119 (80%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 107239 AGAACCGTGAGAGTGGTCAATGGACGACTTCTCGTGCTCCTCGAAATAAATACCCAGACA 107298 |||| ||||||||||||||||||||||| ||| |||||| |||||||| |||||||| Sbjct 54362 AGAAAAGTGAGAGTGGTCAATGGACGACTCCTCTTGCTCCAGTAAATAAATTCCCAGACA 54421 Query 107299 TAGTGCTAACAATGGAATGGCTAAATGTTTTATGTGACAGATTGCTATGCTGAGCAGGA 107357 ||| | || || | || |||||||| | | |||||||| ||| |||| ||||||| Sbjct 54422 TAGCTCAAATAACGTAACAGCTAAATG---TCTATGACAGATCGCTGTGCTAAGCAGGA 54477 >seq131 Length=856804 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || |||||||| |||||||| || ||||| ||| ||| Sbjct 308815 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308874 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| || || || |||| | || |||||| || || || || || ||||||||| | Sbjct 308875 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308934 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| || | | |||| ||||| | || ||||| | || | ||||||| Sbjct 308935 ATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTG 308994 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||||| |||||||||||||| Sbjct 308995 CCAGTTAAGGTTTTCACAAAAATCTGCAT 309023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || |||||||| |||||||| || ||||| ||| ||| Sbjct 308131 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308190 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| || || || |||| | || |||||| || || || || || ||||||||| | Sbjct 308191 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308250 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || || | | |||| ||||| | || ||||| | || | |||||| Sbjct 308251 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308310 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||||||||||| || ||||| Sbjct 308311 CCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || |||||||| |||||||| || ||||| ||| ||| Sbjct 308359 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308418 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| || || || |||| | || |||||| || || || || || ||||||||| | Sbjct 308419 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308478 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || || | | |||| ||||| | || ||||| | || | |||||| Sbjct 308479 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308538 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||||||||||| || ||||| Sbjct 308539 CCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || |||||||| |||||||| || ||||| ||| ||| Sbjct 308587 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308646 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| || || || |||| | || |||||| || || || || || ||||||||| | Sbjct 308647 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308706 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || || | | |||| ||||| | || ||||| | || | |||||| Sbjct 308707 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308766 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||||||||||| || ||||| Sbjct 308767 CCAGTTAATGTTTTTACAAAGATTTGCAT 308795 >seq10 Length=3673010 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 107225 AACCGATTCTCCATAGAACCGTGAGAGTGGTCAATGGACGACTTCTCGTGCTCCTCGAAA 107284 || || ||| | | |||| | ||||||||||||||||||||||||||| ||| |||| Sbjct 492166 AAGCGTTTCCCAAAAGAAAAGATAGAGTGGTCAATGGACGACTTCTCGTGGTCCAGGAAA 492225 Query 107285 TAAATACCCAGACATAGTGCTAACAATGGAATGGCTAAATGTTTTATGTGACAGATTGCT 107344 ||||| ||||||||||| | || || | || |||||||| | ||||| ||||| | Sbjct 492226 TAAATTCCCAGACATAGCTCAAATAACGAAACAGCTAAATG---TCTGTGATAGATTATT 492282 Query 107345 ATGCTGAGCAGGA 107357 | || ||||||| Sbjct 492283 GTACTAAGCAGGA 492295 >seq40 Length=955138 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/133 (75%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 107225 AACCGATTCTCCATAGAACCGTGAGAGTGGTCAATGGACGACTTCTCGTGCTCCTCGAAA 107284 || || ||| | | |||| |||||||||||||||||||||| ||| |||||| ||| Sbjct 208108 AAGCGTTTCCCAAAAGAAAAATGAGAGTGGTCAATGGACGACTCCTCTTGCTCCAGTAAA 208049 Query 107285 TAAATACCCAGACATAGTGCTAACAATGGAATGGCTAAATGTTTTATGTGACAGATTGCT 107344 ||||| || ||||||| | || || | || |||| ||| | | |||||||| ||| Sbjct 208048 TAAATTCCAGGACATAGCTCAAATAACGAAACAGCTAGATG---TCTATGACAGATCGCT 207992 Query 107345 ATGCTGAGCAGGA 107357 |||| ||||||| Sbjct 207991 GTGCTAAGCAGGA 207979 >seq1478 Length=1500 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/106 (78%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 107250 AGTGGTCAATGGACGACTTCTCGTGCTCCTCGAAATAAATACCCAGACATAGTGCTAACA 107309 |||||||||||||| ||| |||||||||| | ||||||| |||| || ||| | || | Sbjct 1150 AGTGGTCAATGGACTACTCCTCGTGCTCCACTGAATAAATTCCCACACGTAGCTCAAATA 1091 Query 107310 ATGGAATGGCTAAATGTTTTATGTGACAGATTGCTATGCTGAGCAG 107355 ||| || |||||||| | | |||||||| ||| |||| ||||| Sbjct 1090 ATGAAACAGCTAAATG---TCTATGACAGATCGCTGTGCTAAGCAG 1048 >seq269 Length=239315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/119 (76%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 107239 AGAACCGTGAGAGTGGTCAATGGACGACTTCTCGTGCTCCTCGAAATAAATACCCAGACA 107298 |||| |||||||||||||| | ||||| ||| |||||| |||| ||| |||||||| Sbjct 106313 AGAAAAGTGAGAGTGGTCAACG-ACGACAGCTCTTGCTCCAGCAAATCAATTCCCAGACA 106255 Query 107299 TAGTGCTAACAATGGAATGGCTAAATGTTTTATGTGACAGATTGCTATGCTGAGCAGGA 107357 ||| | | || |||| |||||||| | | |||||||| ||| |||||||| ||| Sbjct 106254 TAGCTCAAGTAACGGAACAGCTAAATG---TCTATGACAGATCGCTGTGCTGAGCGGGA 106199 >seq90 Length=836232 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/131 (74%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 107224 TAACCGATTCTCCATAGAACCGTGAGAGTGGTCAATGGACGACTTCTCGTGCTCCTCGAA 107283 ||| | || | || | ||| ||||||||| ||||||||||||| |||||||||| || Sbjct 283568 TAATCCATACCCCGTTGAAAAGTGAGAGTGATCAATGGACGACTCCTCGTGCTCCCGTAA 283627 Query 107284 ATAAATACCCAGACATAGTGCTAACAATGGAATGGCTAAATGTTTTATGTGACAGATTGC 107343 |||||| |||||||||| | || | | || | |||||| | | |||| ||| || Sbjct 283628 ATAAATTTCCAGACATAGCTCAAATTACGAAACAGGTAAATG---TCTATGACTGATCGC 283684 Query 107344 TATGCTGAGCA 107354 | |||| |||| Sbjct 283685 TGTGCTAAGCA 283695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475468733414800