Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017
-06-23] 5,395 sequences; 248,577,651 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq445 167 2e-36
seq221 120 3e-22
seq64 120 3e-22
seq484 105 6e-18
seq131 98.7 9e-16
seq10 98.7 9e-16
seq40 89.7 5e-13
seq1478 86.0 6e-12
seq269 84.2 2e-11
seq90 82.4 7e-11
>seq445
Length=79264
Score = 167 bits (184), Expect = 2e-36
Identities = 330/486 (68%), Gaps = 2/486 (0%)
Strand=Plus/Minus
Query 22322 TATTTTGTCGAGTGGGGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCG 22381
|| || || || ||||| || |||| | | || |||| ||| ||||| | ||
Sbjct 27710 TACTTCGTTGAATGGGGTGTATACCCCAGGAAATTCCCCGTCGATCGTGTGCCGATTCCA 27651
Query 22382 AACCTGTCGCATTTGCTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGAC 22441
|| || | ||| | || ||||||||| | || ||||| || || || ||||| || |||
Sbjct 27650 AATCTCACACATCTTCTTTACGGTTTCATACCGATATGTGGGGGTGATGGCATTAATGAC 27591
Query 22442 GCCCTGAAAACGGTGCCGGGAAGCTTCGAGGCGTTGCAACGGTCGTGCGTCAATAGAGCC 22501
| ||| | |||||| || | || | || || || ||| | | |
Sbjct 27590 AGTTTAAAAGAAATCGAGGGAAGTTTTCAAGCACTACAGCGTTCATGCAGTGGTCGGGAA 27531
Query 22502 GATTTCAAGGTGACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTG 22561
||||| ||||| |||| || ||||| ||||| || |||| |||||||||| ||| |
Sbjct 27530 GATTTTAAGGTTTCCATCCATGATCCTTGGGCTGCTTTACAGAAACCTCAAAGAGGTCTA 27471
Query 22562 TCGTCGTGGAACGAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCG 22621
|| || ||||| ||||| || |||||||| ||||||||||||||| || ||||| |||
Sbjct 27470 TCCTCCTGGAATGAACCTTATAAAGGCAATTTTGGTCAATTGATGTCATTGAAACAAGCT 27411
Query 22622 AATCCTCATCTCAAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTAT 22681
|| || | | || | ||| |||| || || || ||||| || | ||||| ||| |
Sbjct 27410 AAACCAGACTTGAAGATTTTACCATCAATTGGTGGGTGGACTTTAGCTGATCC-TTTCTT 27352
Query 22682 CATATGCAC-GACAAGAACGTGAGACAAATTTTCATCGATTCGGTGGAAGAGTATTTGAT 22740
| | | ||| || |||| | |||| || | || || || |||| | | |
Sbjct 27351 CTTCTTCACTGATAAGAGTAAGCGACAGCGATTTGTAGAATCTGTTAAAGATTTCCTTTT 27292
Query 22741 CACGTGGAAGTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGC 22800
|| ||||| ||||||||||| || |||||||| |||||||| || || || || || ||
Sbjct 27291 AACCTGGAAATTCTTTGACGGTGTTGATATTGACTGGGAGTTCCCTGGTGGTAAAGGTGC 27232
Query 22801 GAATCC 22806
|| ||
Sbjct 27231 TAACCC 27226
>seq221
Length=486136
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | ||||| || | ||| | ||||||||||||||||| |||||||||
Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || | |||||||| || |||||||||| |||||||| || ||
Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| ||||| |||| | ||| ||| || || | | ||| | || |||| | |||||
Sbjct 79376 ATTCCCTCTTTGT-CTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGAC 79434
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || || || || || ||||||||||||||||||||
Sbjct 79435 TTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCAT 79482
>seq64
Length=1946208
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957
|| |||||| | ||| | ||||| || |||||||||||||| ||| | || |||
Sbjct 785712 TCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGATAAGGTACGACC 785771
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || | |||||||||||| | ||||||||||||||||| || || || || |||||
Sbjct 785772 ATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGAATACCTTCCTT 785831
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| ||| || ||| | | |||| |||||| | ||| || || | ||| |
Sbjct 785832 GTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACCTCTAGGGTAAT 785891
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| || || || || || || |||||||||||
Sbjct 785892 GGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCAT 785927
>seq484
Length=61757
Score = 105 bits (116), Expect = 6e-18
Identities = 95/119 (80%), Gaps = 3/119 (3%)
Strand=Plus/Plus
Query 107239 AGAACCGTGAGAGTGGTCAATGGACGACTTCTCGTGCTCCTCGAAATAAATACCCAGACA 107298
|||| ||||||||||||||||||||||| ||| |||||| |||||||| ||||||||
Sbjct 54362 AGAAAAGTGAGAGTGGTCAATGGACGACTCCTCTTGCTCCAGTAAATAAATTCCCAGACA 54421
Query 107299 TAGTGCTAACAATGGAATGGCTAAATGTTTTATGTGACAGATTGCTATGCTGAGCAGGA 107357
||| | || || | || |||||||| | | |||||||| ||| |||| |||||||
Sbjct 54422 TAGCTCAAATAACGTAACAGCTAAATG---TCTATGACAGATCGCTGTGCTAAGCAGGA 54477
>seq131
Length=856804
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | || || || |||||||| |||||||| || ||||| ||| |||
Sbjct 308815 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308874
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
| ||| || || || |||| | || |||||| || || || || || ||||||||| |
Sbjct 308875 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308934
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
||||| || | | |||| ||||| | || ||||| | || | |||||||
Sbjct 308935 ATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTG 308994
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||||| ||||||||||||||
Sbjct 308995 CCAGTTAAGGTTTTCACAAAAATCTGCAT 309023
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | || || || |||||||| |||||||| || ||||| ||| |||
Sbjct 308131 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308190
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
| ||| || || || |||| | || |||||| || || || || || ||||||||| |
Sbjct 308191 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308250
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| || || | | |||| ||||| | || ||||| | || | ||||||
Sbjct 308251 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308310
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||||||||||| || |||||
Sbjct 308311 CCAGTTAATGTTTTTACAAAGATTTGCAT 308339
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | || || || |||||||| |||||||| || ||||| ||| |||
Sbjct 308359 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308418
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
| ||| || || || |||| | || |||||| || || || || || ||||||||| |
Sbjct 308419 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308478
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| || || | | |||| ||||| | || ||||| | || | ||||||
Sbjct 308479 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308538
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||||||||||| || |||||
Sbjct 308539 CCAGTTAATGTTTTTACAAAGATTTGCAT 308567
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | || || || |||||||| |||||||| || ||||| ||| |||
Sbjct 308587 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308646
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
| ||| || || || |||| | || |||||| || || || || || ||||||||| |
Sbjct 308647 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308706
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| || || | | |||| ||||| | || ||||| | || | ||||||
Sbjct 308707 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308766
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||||||||||| || |||||
Sbjct 308767 CCAGTTAATGTTTTTACAAAGATTTGCAT 308795
>seq10
Length=3673010
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/133 (77%), Gaps = 3/133 (2%)
Strand=Plus/Plus
Query 107225 AACCGATTCTCCATAGAACCGTGAGAGTGGTCAATGGACGACTTCTCGTGCTCCTCGAAA 107284
|| || ||| | | |||| | ||||||||||||||||||||||||||| ||| ||||
Sbjct 492166 AAGCGTTTCCCAAAAGAAAAGATAGAGTGGTCAATGGACGACTTCTCGTGGTCCAGGAAA 492225
Query 107285 TAAATACCCAGACATAGTGCTAACAATGGAATGGCTAAATGTTTTATGTGACAGATTGCT 107344
||||| ||||||||||| | || || | || |||||||| | ||||| ||||| |
Sbjct 492226 TAAATTCCCAGACATAGCTCAAATAACGAAACAGCTAAATG---TCTGTGATAGATTATT 492282
Query 107345 ATGCTGAGCAGGA 107357
| || |||||||
Sbjct 492283 GTACTAAGCAGGA 492295
>seq40
Length=955138
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/133 (75%), Gaps = 3/133 (2%)
Strand=Plus/Minus
Query 107225 AACCGATTCTCCATAGAACCGTGAGAGTGGTCAATGGACGACTTCTCGTGCTCCTCGAAA 107284
|| || ||| | | |||| |||||||||||||||||||||| ||| |||||| |||
Sbjct 208108 AAGCGTTTCCCAAAAGAAAAATGAGAGTGGTCAATGGACGACTCCTCTTGCTCCAGTAAA 208049
Query 107285 TAAATACCCAGACATAGTGCTAACAATGGAATGGCTAAATGTTTTATGTGACAGATTGCT 107344
||||| || ||||||| | || || | || |||| ||| | | |||||||| |||
Sbjct 208048 TAAATTCCAGGACATAGCTCAAATAACGAAACAGCTAGATG---TCTATGACAGATCGCT 207992
Query 107345 ATGCTGAGCAGGA 107357
|||| |||||||
Sbjct 207991 GTGCTAAGCAGGA 207979
>seq1478
Length=1500
Score = 86.0 bits (94), Expect = 6e-12
Identities = 83/106 (78%), Gaps = 3/106 (3%)
Strand=Plus/Minus
Query 107250 AGTGGTCAATGGACGACTTCTCGTGCTCCTCGAAATAAATACCCAGACATAGTGCTAACA 107309
|||||||||||||| ||| |||||||||| | ||||||| |||| || ||| | || |
Sbjct 1150 AGTGGTCAATGGACTACTCCTCGTGCTCCACTGAATAAATTCCCACACGTAGCTCAAATA 1091
Query 107310 ATGGAATGGCTAAATGTTTTATGTGACAGATTGCTATGCTGAGCAG 107355
||| || |||||||| | | |||||||| ||| |||| |||||
Sbjct 1090 ATGAAACAGCTAAATG---TCTATGACAGATCGCTGTGCTAAGCAG 1048
>seq269
Length=239315
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/119 (76%), Gaps = 4/119 (3%)
Strand=Plus/Minus
Query 107239 AGAACCGTGAGAGTGGTCAATGGACGACTTCTCGTGCTCCTCGAAATAAATACCCAGACA 107298
|||| |||||||||||||| | ||||| ||| |||||| |||| ||| ||||||||
Sbjct 106313 AGAAAAGTGAGAGTGGTCAACG-ACGACAGCTCTTGCTCCAGCAAATCAATTCCCAGACA 106255
Query 107299 TAGTGCTAACAATGGAATGGCTAAATGTTTTATGTGACAGATTGCTATGCTGAGCAGGA 107357
||| | | || |||| |||||||| | | |||||||| ||| |||||||| |||
Sbjct 106254 TAGCTCAAGTAACGGAACAGCTAAATG---TCTATGACAGATCGCTGTGCTGAGCGGGA 106199
>seq90
Length=836232
Score = 82.4 bits (90), Expect = 7e-11
Identities = 97/131 (74%), Gaps = 3/131 (2%)
Strand=Plus/Plus
Query 107224 TAACCGATTCTCCATAGAACCGTGAGAGTGGTCAATGGACGACTTCTCGTGCTCCTCGAA 107283
||| | || | || | ||| ||||||||| ||||||||||||| |||||||||| ||
Sbjct 283568 TAATCCATACCCCGTTGAAAAGTGAGAGTGATCAATGGACGACTCCTCGTGCTCCCGTAA 283627
Query 107284 ATAAATACCCAGACATAGTGCTAACAATGGAATGGCTAAATGTTTTATGTGACAGATTGC 107343
|||||| |||||||||| | || | | || | |||||| | | |||| ||| ||
Sbjct 283628 ATAAATTTCCAGACATAGCTCAAATTACGAAACAGGTAAATG---TCTATGACTGATCGC 283684
Query 107344 TATGCTGAGCA 107354
| |||| ||||
Sbjct 283685 TGTGCTAAGCA 283695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475468733414800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |