Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq219 107 2e-18 seq149 87.8 2e-12 >seq219 Length=603346 Score = 107 bits (118), Expect = 2e-18 Identities = 464/726 (64%), Gaps = 16/726 (2%) Strand=Plus/Plus Query 115894 CGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 115953 ||||| | || ||||| | || | || ||||| | ||||| || || | ||||| Sbjct 377514 CGTCTTTGGTAAATGTTTGATGTAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGA 377573 Query 115954 GCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTA 116013 || |||||||| |||||||| || || | |||||| || || ||||| | | Sbjct 377574 GCGGTGGAGGCAGTGGGCATTGGCGCTAATAGAAGGGAATTACGAAGACCATGCTTTGCA 377633 Query 116014 ATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCC-TCCCACATATC 116072 || ||| || || || |||| || | || || || | | ||||||||| Sbjct 377634 ATTTTTTCTTTAAGAGCAGCCCAATCCCAAA-GATCTGTGGGTGTTTTGTTCCACATATC 377692 Query 116073 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 116132 |||| || || |||||| || || |||||| | || || || || Sbjct 377693 GTACTGTAGAATCCCTTGGCTAGCAGGACTTCCCTCGTAAGTGCTGTAAACACCATCTCT 377752 Query 116133 CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGC 116192 ||| || || || | || |||||||| || ||| ||| || || ||||| || | Sbjct 377753 CTCGGCTAACTCACAACTTGCCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTGCTG 377812 Query 116193 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA-AATAAATACATCCG 116251 ||| | | | |||| || ||| ||| | | || || || |||| |||||| Sbjct 377813 ATTAAGTAATATTGCCTTCTCACTCTCATACGGTAATCT-CATAAGAACAAATGCATCCG 377871 Query 116252 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT 116311 | | || || || |||| ||||| || | ||| ||||||| || ||| || || Sbjct 377872 CTAATCCCTGAACGCCGATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGC---CT 377928 Query 116312 CC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTG 116368 || || |||||||| || ||| |||| | || ||||||| || ||| || | Sbjct 377929 CCGGTACAGGATAAAAGTTGACATCAATAATTTTGTTCAGATTTTGTGTAACAGTTTTAG 377988 Query 116369 TGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAA 116428 | | ||| | || |||| | |||| || | | | |||| ||| || || | Sbjct 377989 TTACTTCTTTCAGTTTTTTGAAATCGAATTTTT---TGTTTTCA---ACAAACATATTTA 378042 Query 116429 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 116488 | || ||||| || ||||| ||||| | |||||| | || || || | ||||| Sbjct 378043 GAGCTATTGAGGCGAGATTGCACACGGCAACCTCATCTTCCGATGTATATTCAACAATTT 378102 Query 116489 CCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 116548 | ||||||||||| | || || || || | || |||||||| ||| |||||| Sbjct 378103 CAGTACACAAATTACTGCATTTGATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTAC 378162 Query 116549 ACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 116608 | ||||| ||||| ||||| ||||| || || || || ||| | | | ||| || | Sbjct 378163 ATGCATCTTTGTACAGCATGTATGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCTT 378222 Query 116609 TCCATA 116614 |||||| Sbjct 378223 TCCATA 378228 >seq149 Length=636072 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 127550 GAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAA 127609 || ||||||||||| ||| || ||| ||||||||||| | |||||||| |||||| Sbjct 239450 GAAATGAGTTCATTACTGAAAGTCAAACCGGGCATGAGACCTCTCTTCTTCATCCAGAAG 239391 Query 127610 ATCGCA-CAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACG 127668 || | | ||||| | ||||||||||| ||||| || ||| || || |||| | || Sbjct 239390 ATAGAAGCAAAACTA-CCAGAGAAGAAAATCCCTTCAACAGCAGCAAATGCAACAATGCG 239332 Query 127669 CTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTC 127728 ||| |||| | | | ||| | ||| ||||| | ||||| | |||||| |||| Sbjct 239331 CTCTCCAAATGTGGCCGTCTTACTGGCAATCCACTGAAGGGCCCAATCTGCCTTCTTCTT 239272 Query 127729 GATACATGGGACGGTCT 127745 | ||| || | |||| Sbjct 239271 TACACAGGGTAAAGTCT 239255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613465826608200