Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq131 127 5e-24 seq221 102 2e-16 >seq131 Length=856804 Score = 127 bits (140), Expect = 5e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||| || || || |||||||| | |||||| |||| || || | ||| Sbjct 308808 TCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCC 308867 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | |||||| ||||| ||||| || | ||||||||| || ||||||||| Sbjct 308868 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308927 Query 199534 CTCCTGAATCTTTTGCTTCACGGAT-TCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 ||||| || ||| |||| | | |||| ||||| | | ||| || ||||| |||| Sbjct 308928 GTCCTGGAT-TTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGA 308986 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || || | |||||||||||||| || Sbjct 308987 TCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTG 309020 >seq221 Length=486136 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| ||||| ||||| |||| ||||||||||| | || | || ||| Sbjct 78815 AGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCT 78874 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| |||||||| ||||| ||| || |||||| || Sbjct 78875 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCT 78934 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || || | ||||||| | ||| || || || ||||| || Sbjct 78935 TGGAT-TTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAAGGTGATGGT 78993 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 78994 TTTGCCAGTCAAGGTCTTGACGAAGATCTG 79023 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| ||||| ||||| |||| ||||||||||| | || | || ||| Sbjct 78587 AGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCT 78646 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| |||||||| ||||| ||| || |||||| || Sbjct 78647 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCT 78706 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || || | ||||||| | ||| || || | ||||| || Sbjct 78707 TGGAT-TTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAGGGTGATGGT 78765 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 78766 TTTGCCAGTCAAGGTCTTGACGAAGATCTG 78795 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| ||||||||||| | || | || |||||||||||||| || Sbjct 78374 GTAGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCA 78433 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| |||||||| ||||| ||| || ||||| || || || ||| ||| Sbjct 78434 GCAAAGATCAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTT 78493 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || || | |||||| | | ||| || || | ||||| || || || || | || Sbjct 78494 ACATTCTCTATGGTGTCGGAGGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTC 78553 Query 199613 TTCACAAAAATTTG 199626 || || || || || Sbjct 78554 TTGACGAAGATCTG 78567 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || ||||| || ||||| || ||| | ||| | ||||||||||| | || ||| Sbjct 79353 ATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGATTACAACATTCAAAAA 79294 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||||||||| ||||||||| | ||||| Sbjct 79293 GAGTCTACTCTTCATCTTGTTTTGCGTCTTCG 79262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178840108886465