Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq445 221 8e-53 >seq445 Length=79264 Score = 221 bits (244), Expect = 8e-53 Identities = 804/1246 (65%), Gaps = 28/1246 (2%) Strand=Plus/Plus Query 5817 TTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCAC 5876 || |||||||| ||||||| || || | | |||||| ||||| || || ||||||||| Sbjct 26524 TTACCCAAACCCATGTTCATAGCGTTCAGTAAATCACCATTGTCGGCATCAATTTCCCAC 26583 Query 5877 GCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGA 5936 || || | |||||| | || || || |||||| ||||| ||| | | || ||| Sbjct 26584 GCGAAGAGACCACCGAGTTTATTATTCCTTACATATTTACCCTTTTCAATAACAGATCTT 26643 Query 5937 TCGTTGTCGTACGTAACTAAATCATTATTA-----TC-GTAGACGTACGGAGATTGTGCA 5990 | || ||||| || || | || || || | |||| || |||| || || Sbjct 26644 GCATTATCGTAAGTGACGAGGTCCCCGGTAGATGGTCTGAAGACATAAGGAGCCTGGGCT 26703 Query 5991 ATGTTATCATAG---AATTGTACACTTTCGTCGTACCTATTTA-----CAATATCTTTAT 6042 | || || ||| |||| || |||| | | | ||||| | || ||| ||| Sbjct 26704 ACATTGTCGTAGTGGAATTCC-CATTTTCCTTGGGC-TATTTCGTTGGCGATTTCTCTAT 26761 Query 6043 AATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACG 6102 |||| || || ||| || |||||| ||||| || || | |||| | ||||| || | Sbjct 26762 AATCAATAACACCGTCTTGCCATGTTCCTTTGACTGGTCCAGTAGCATTGCCTGTGAATG 26821 Query 6103 GATTATTGTTTTCGACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTA 6162 ||||||| ||| | || || || |||| || || ||||||||||| ||||| | Sbjct 26822 GATTATTTCCCTCGTAACCATTAACCCCAGTCCATCCTCGACCATACATAGCAACACCAA 26881 Query 6163 CTACTAATTTAGTCGAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGTTG 6222 |||| | || ||| ||| |||| |||||| || | | | || | ||||| Sbjct 26882 CTACGATCTTTTTCGGTGACACACCTTGAGCTAACAAATATTTCACACCGAAGTCGGTTG 26941 Query 6223 TGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTTT 6282 ||||| | || ||| | ||| | || || || | ||| |||||| |||||| | | Sbjct 26942 TGTAAGTCTCTTTAGGATTCCATGCCGGTGCATACAACGGAGTTTGATGTCCCAAAGTAT 27001 Query 6283 CCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGTT 6342 | | ||||| || ||||| |||||||| |||| || || || | || | || ||| Sbjct 27002 CATTTGACCATGCTCCTTTGAAATCGTAACTCATAACGAAAATGTGGTCCATGTATTGTT 27061 Query 6343 GCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTTA 6402 |||| | || ||||||||||| | |||||||| | || |||| ||| || || | Sbjct 27062 GCGCTTTTGCGTAATCGACAACCTGAATTTTGTCCCATCCAGCACTGATTGCTGAGGTCA 27121 Query 6403 GTTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAA--CTCCTT 6460 ||| | |||||| | | || | | |||||||| ||||| || | Sbjct 27122 GTTCGTACGTTTTACCAGTGGTAGCAGATAAATCATCAAGCATTTCACGTAATTCTTCCA 27181 Query 6461 TAAAAGTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACC 6520 | ||| || ||| | || | | || | | | || || ||||| ||||| Sbjct 27182 TCAAACTAACGTAAA----CAGC-ACCATCTTCTGGGCTTCCGAGGTCTGGGTTAGCACC 27236 Query 6521 TTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAA 6580 |||||| || || |||||||| || || || || ||||| || |||||||| ||| | Sbjct 27237 TTTACCACCAGGGAACTCCCAGTCAATATCAACACCGTCAAAGAATTTCCAGGTTAAAAG 27296 Query 6581 AAATTCGCGCACACTATCAACAAACGTATTTCGTTTTTCGACGTCGTTTAACTGGTAAAA 6640 || || ||| || ||||| | ||| || || | || | | || Sbjct 27297 GAAATCTTTAACAGATTCTACAAATCGCTGTCGCTTACTCTTATCAGTGAAGAAGAAGAA 27356 Query 6641 CGGATC-GCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGGC 6699 ||||| ||||| ||||| || || || ||||| || || | || ||||| || Sbjct 27357 AGGATCAGCTAA-AGTCCACCCACCAATTGATGGTAAAATCTTCAAGTCTGGTTTAGCTT 27415 Query 6700 GCTTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGACAC 6759 | || | | ||| || || ||||| || ||||| || ||||| || ||| | || Sbjct 27416 GTTTCAATGACATCAATTGACCAAAATTGCCTTTATAAGGTTCATTCCAGGAGGATAGAC 27475 Query 6760 CTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTTTTC 6819 || |||| ||||| || | || |||| |||||| |||| || || ||||||| | Sbjct 27476 CTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGATCATGGATGGAAACCTTAAAATCTTCCC 27535 Query 6820 GGCCGGCGCACGATTTTTGCAACGCCTCAAACGAACTGGGTATTTGTTGTTTAAGCGCAT 6879 | || ||| || || | || | ||| | |||| | ||||| | | Sbjct 27536 GACCACTGCATGAACGCTGTAGTGCTTGAAAACTTCCCTCGATTTCT--TTTAAAC-TGT 27592 Query 6880 CGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGATTAG 6939 | || | ||||| || ||||| || ||||| || ||||| | | |||||| ||||| | Sbjct 27593 CATTAATGCCATCACCCCCACATATCGGTATGAAACCGTAAAGAAGATGTGTGAGATTTG 27652 Query 6940 GAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAGTAAG 6999 |||| || | ||| |||| ||| || ||| ||||||||||| || ||||||| Sbjct 27653 GAATCGGCACACGATCGACGGGGAATTTCCTGGGGTATACACCCCATTCAACGAAGTAAG 27712 Query 7000 CGCCCACAACATTATCGGTAATTTTTTCGAACGGTACATTGTTTTC 7045 | || || || ||| | | ||| || ||| ||| || ||||| Sbjct 27713 CTCCAACGACTTTACCAGACGTTTGTTTGAATGGTTTGTTCTTTTC 27758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347346759906035