Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq221 131 2e-25 seq149 116 4e-21 seq148 89.7 5e-13 >seq221 Length=486136 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||||||||||||| | || ||||| || || Sbjct 78570 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTAGAAGTCGAACCCTCC 78511 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | |||||||| ||||| || || || || | |||||| Sbjct 78510 GACACCATAGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATCCCTCCAGACCAA 78451 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| |||| || || || ||||||||| Sbjct 78450 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTTCTGACTACAAC 78391 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||||| || || ||| | |||||||| Sbjct 78390 ATCCAGAAGGAGTCTACCTTGCATTTAGTTCTCCGTCTCAGAGGCGG 78344 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||||||||||||| | || ||||| | | Sbjct 78798 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTAGAAGTCGAACCTTCA 78739 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||||||| |||||||| || || || |||||||| Sbjct 78738 GACACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAA 78679 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| |||| || || || ||||||||| Sbjct 78678 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTTCTGACTACAAC 78619 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| |||| || ||| | || || || ||| | || || Sbjct 78618 ATCCAGAAGGAATCGACACTCCATCTCGTACTACGATTGCGTGGTGG 78572 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||||||||||||| | || ||||| | | Sbjct 79026 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCTTAGAAGTCGAACCTTCA 78967 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||||||| |||||||| || || || |||||||| Sbjct 78966 GACACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAA 78907 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| |||| || || || ||||||||| Sbjct 78906 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTTCTGACTACAAC 78847 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| |||| || ||| | || || || ||| | || || Sbjct 78846 ATCCAGAAGGAATCGACACTCCATCTCGTACTACGATTGCGTGGTGG 78800 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || ||||| ||||| || || | || || ||| | | Sbjct 79254 ATGCAGATCTTTGTTAAAACCCTTACGGGTAAAACTATAACGTTAGAGGTAGAGCCTTCT 79195 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| | || | ||||||| ||||| || || || ||| | || || Sbjct 79194 GATACTATTGAAAACG-TGAAGGCTAAAATCCAAGACAAGGAAGGCATCCCCCCAGATCA 79136 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| ||| || ||||| | || || | || || ||| ||||||||| Sbjct 79135 ACAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTACAA 79076 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || || ||| | || || ||| || | || || Sbjct 79075 CATCCAGAAGGAATCTACACTCCATCTCGTACTACGTCTGCGTGGTGG 79028 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || ||||||||||| || || || ||||| || | || ||||| | Sbjct 79485 AAAATGCAGATTTTTGTAAAAACGCTTACTGGAAAGACCATAACTTTGGAAGTCGAACCT 79426 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| |||||| ||||| | |||||||||||||| || | || Sbjct 79425 TCGGATACTATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAGGGAATCCCACCAGAT 79366 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || | || | || || ||||| |||| |||| || || || ||| ||| Sbjct 79365 CAGCAACGATTGATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGATTAC 79306 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| || | || || ||| | || ||||| Sbjct 79305 AACATTCAAAAAGAGTCTACTCTTCATCTTGTTTTGCGT 79267 >seq149 Length=636072 Score = 116 bits (128), Expect = 4e-21 Identities = 160/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 || || || ||||||||||| || ||||||||||| ||||||||||| || | || || Sbjct 239459 TCATCTCTAGAAATGAGTTCATTACTGAAAGTCAAACCGGGCATGAGACCTCTCTTCTTC 239400 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 | ||| || || | || ||||| || || ||||| | || || || || || || || Sbjct 239399 ATCCAGAAGATAGAAGCAAAACTACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATGCA 239340 Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 || | |||||| || || ||||| || ||||| ||||| | || ||||| || ||| Sbjct 239339 ACAATGCGCTCTCCAAATGTGGCCGTCTTACTGGCAATCCACTGAAGGGCCCAATCTGCC 239280 Query 133099 TT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 || |||||| || || || | || || || || || |||| Sbjct 239279 TTCTTCTTT-ACACAGGGTAAAGTCTCAATAGCATTGAACA 239240 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 ||||||||||||||||| || || ||||| || || || || || || ||||| | |||| Sbjct 239111 GAATACATTTCCGAGTGAACATTTTCCATAGCAATCTGGAAACCATAGAAGCATCTCGCC 239052 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || |||||| ||||| || | ||| || || || ||||| || || || || || || Sbjct 239051 TCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGAGATTCTCATTTACTATACCATCT 238992 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATG 133343 || || ||||| |||| || ||||| || || || Sbjct 238991 GATGCCGCAAAAAACGCCAATACATGCTTAATAAAGTG 238954 >seq148 Length=419512 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| |||||||||||| |||| ||||| || Sbjct 143864 AAGATGCAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTCGAACCC 143805 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | |||| ||||| | |||||||||||||| || | ||| Sbjct 143804 TCGGACACCATCGAGAATGTCAAAGCTAAAATACAAGACAAAGAGGGAATCCCTCCGGAC 143745 Query 38361 CAACAGCGG 38369 || ||| || Sbjct 143744 CAGCAGAGG 143736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500139069596800