Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq219 239 6e-58 >seq219 Length=603346 Score = 239 bits (264), Expect = 6e-58 Identities = 749/1148 (65%), Gaps = 33/1148 (3%) Strand=Plus/Minus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 |||||||||||| ||| |||| | |||| ||| | | || | ||| |||||| Sbjct 378604 GGTACAAATGGTATTTCAAATGGACTCGTTCCGATGTTGAGGGTGTATAATAACACAGCA 378545 Query 111963 CGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 | ||||| | |||| || | || |||| | |||| ||||| | ||||| Sbjct 378544 AGATATGTTGATCAAGGGGGCAATAAACGTCCGGGAGCATTCGCCATCTATGTGGAGCCG 378485 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 ||||| | |||||| | ||||| | || || ||| ||| | || || | | Sbjct 378484 TGGCATTCTGATATCTTCGAGTTTTTGGATTTAAAGAAGAACACAGGAAAGGAAGAAGTG 378425 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | | || | || | ||||| ||||| |||||| | ||||||||||| |||||| Sbjct 378424 AGGGCCAGAGAATTGTTTTATGCTCTATGGATACCAGATTTGTTCATGAAGAGGGTTGAG 378365 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 | || |||||| ||| | ||||| | || || || || | ||| Sbjct 378364 AGAAATGAAAATTGGAGTCTGATGTGTCCCCATAACTGTCCAGGGCTTTATGATTGTTAC 378305 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAA--------GTCGGGCGA 112251 ||||| || |||||||| | || || || || |||||| ||| ||| | Sbjct 378304 GGTGAAGAATTTGAAGCGTTGTATGAGAAATATGAACAAGAAAACAGATTTGTCAGGCAA 378245 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 | || || | ||| | || | |||||||| ||| | | | ||| ||| |||| Sbjct 378244 GTACG-CGCT--CAGAT----AT-TATGGAAAGCCATTATTGAAGCGCAAGTCGAAACTG 378193 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 |||| ||||| ||||| |||||||| || |||||| ||| ||||||||||| ||| | | Sbjct 378192 GTACTCCATACATGCTGTACAAAGATGCATGTAACAGAAAAAGTAATCAAAAAAATCTTG 378133 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431 | ||||| | || | ||||| ||||| | |||| |||| |||||||| Sbjct 378132 GAACTATCAAATGCAGTAATTTGTGTACTGAAATTGTTGAATATACATCGGAAGATGAGG 378073 Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 112491 || ||||| || ||||| ||||| ||||| | || ||| || | ||||| | Sbjct 378072 TTGCCGTGTGCAATCTCGCCTCAATAGCTCTAAATATGTTTGTTGA-----AAACAAA-A 378019 Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 ||| |||| ||||||| | ||||| || |||||||| ||| |||| || |||| | Sbjct 378018 AATTCGATTTCAAAAAACTGAAAGAAGTAACTAAAACTGTTACACAAAATCTGAACAAAA 377959 Query 112552 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 |||||||| || ||||| || || | || || || ||||||| |||| | | Sbjct 377958 TTATTGATGTCAACTTTTATCCTGTACCGGAGGCGAAAAACTCGAATATGAAACACAGGC 377899 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTT-TGTCGCCACGCATTT 112670 | |||||| |||| || || || | ||||||| ||| ||||| || || | | | Sbjct 377898 CCATTGGTATCGGCGTTCAGGGATTAGCGGATGCATTTGTTCTTATGAGATTAC-CGTAT 377840 Query 112671 GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCT 112730 || || | || | | | ||| || |||||||| || || ||| ||| || Sbjct 377839 GAGAGTGAGAAGGCAATATTACTTAATCAGCAAATATTTGAAACGATCTATTACGGTGCG 377780 Query 112731 CTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 || ||||| |||| ||||| || ||| |||||| || || | ||||| | Sbjct 377779 CTCGAGGCAAGTTGTGAGTTAGCCGAGAGAGATGGTGTTTACAGCACTTACGAGGGAAGT 377720 Query 112791 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGA-CCAAGCTTCACTA 112849 || ||| |||||| | || || | ||||||| |||| | | ||| || | Sbjct 377719 CCTGCTAGCCAAGGGATTCTACAGTACGATATGT-GGAACAAAACACCCACAGATCTTTG 377661 Query 112850 CGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 112907 || |||| ||||| || ||| || ||| || | ||||||||||| ||| | Sbjct 377660 GGATTGGGCTGCTCTTAAAGAAAAAATTGCAA--AGCATGGTCTTCGTAATTCCCTTCTA 377603 Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967 | || |||||||| || ||||||||||| ||||| | || |||||||||| |||||| Sbjct 377602 TTAGCGCCAATGCCCACTGCCTCCACCGCTCAAATACTAGGAAATAATGAATCGTTTGAA 377543 Query 112968 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 || | || | ||||| || | ||| || | | ||||||||| | |||||| Sbjct 377542 CCTTTTACATCAAACATTTACCAAAGACGAGTTTTGTCTGGAGAGTTTCAAGTGGTCAAC 377483 Query 113028 AAGCATCT 113035 | ||||| Sbjct 377482 CATCATCT 377475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620700538684400