Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq219 178 2e-39 seq149 84.2 3e-11 >seq219 Length=603346 Score = 178 bits (196), Expect = 2e-39 Identities = 826/1288 (64%), Gaps = 35/1288 (3%) Strand=Plus/Plus Query 109569 AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTG 109628 ||| ||||| || || || |||| || |||| || | ||| || | | ||||| || Sbjct 377339 AATCTCCCATACTGTTTTATACAGATCTCTGATGTCTTTGGGTATTGCTTCAATGTTCTG 377398 Query 109629 AATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTT 109688 ||| || ||| | | ||||||| |||||| |||| ||| ||| | | | Sbjct 377399 AATGGAACCATTGTTATGTATAATGAGATTCTTCATTTCTTCATCCCATAGATCCGCTTG 377458 Query 109689 TTTGAGATC-GTCAACAAGATGCTTGTTGACCACGACAAATTCACCAG-CAAGTGTGCGT 109746 | | ||| || || |||||| | ||||||||| ||| || |||| ||| | ||| Sbjct 377459 AGTCAAATCTGTTAA-AAGATGATGGTTGACCACTTGAAACTCTCCAGACAAAACT-CGT 377516 Query 109747 CGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCA 109806 | |||| ||||| | || | ||||| || | ||||| || ||||| ||||| || Sbjct 377517 CTTTGGTAAATGTTTGATGTAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCG 377576 Query 109807 GTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACC 109866 ||||| || |||||||| || || | ||||| || || ||||| | | | | Sbjct 377577 GTGGAGGCAGTGGGCATTGGCGCTAATAGAAGGGAATTACGAAGACCATGCTTTGCAATT 377636 Query 109867 CGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATA 109926 || | || ||||||| || || | | | | | | ||||||| Sbjct 377637 TTTTCTTTAAGAGCAGCCCAATCCCAAAGATCTGTGGGTGTTTTGTT------CCACATA 377690 Query 109927 TCTGGTTGAAGTACACCCTCAGC-AGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTC 109985 || || || | |||| || ||||||| |||| | || | ||| || || Sbjct 377691 TCGTACTGTAGAAT-CCCTTGGCTAGCAGGACTTCCCTCGTAAGTGCTGTAAACACCATC 377749 Query 109986 AACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATG 110045 |||||| ||||| | ||||| || || | | ||| || || ||||| || || Sbjct 377750 TCTCTCGGCTAACTCACAACTTGCCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTG 377809 Query 110046 AGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACA-AAGAATAAACACAT 110104 ||| | | | || |||| || | || | | | || ||||| ||| ||| Sbjct 377810 CTGATTAAGTAATATTGCCTTCTCACTCTCATACGGTA-ATCTCATAAGAACAAATGCAT 377868 Query 110105 CCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAG 110164 |||||| |||||||| |||| ||||||||| | || ||||| || ||| | || Sbjct 377869 CCGCTAATCCCTGAACGCCGATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGCCT 377928 Query 110165 TTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCG 110224 ||| || ||||||||| || || | || ||||| | || ||||| || | Sbjct 377929 CCGGTACAGGATAAAAGTTGACATCAATAATTTTGTTCAGATTTTGTGTAACAGTTTTAG 377988 Query 110225 TGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGA 110284 | | ||| | ||||| | | ||||||| |||| | || | |||||||| | Sbjct 377989 TTACTTCTTTCAGTTTTTTGAAATCGAATTTTTTGTTTTCAACAA--ACATATTT----A 378042 Query 110285 GAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTT 110344 |||| || || || ||||||||||| | | ||| |||| || ||||| | ||||| Sbjct 378043 GAGCTATTGAGGCGAGATTGCACACGGCAACCTCATCTTCCGATGTATATTCAACAATTT 378102 Query 110345 CCGTACACAAGTTGGAACTCTTAATGACACCCAAG-TTCTTCTGATTCGATTTGGAGTTG 110403 | |||||||| || | || || | ||||| || || ||||| ||| ||| Sbjct 378103 CAGTACACAAATTACTGCATTTGAT-AGTTCCAAGATTTTTTTGATTACTTTTTCTGTTA 378161 Query 110404 CATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCC 110463 |||||||| || || ||||||||||| ||||||||||| || | | | |||||| Sbjct 378162 CATGCATCTTTGTACAGCATGTATGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCT 378221 Query 110464 TTCCAT-ACATCGGCGGCGGGGACAGTTGCGTTAGCGAGAC---CTTCCTCCTCGTACTT 110519 |||||| | ||| | ||| | || |||| | | | | | ||| | || || || Sbjct 378222 TTCCATAATATCTG-AGCGCGTAC--TTGCCTGA-CAAATCTGTTTTCTTGTTCATATTT 378277 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC-CTTGTCGG 110578 ||||| | |||||||| | ||||| |||| |||| |||| | || | || Sbjct 378278 CTCATACAACGCTTCAAATTCTTCACCGTAACAATCATAAAG-CCCTGGACAGTTATGGG 378336 Query 110579 GACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCC 110638 |||| | || ||||||| || |||||||||||||||||||| || || |||| Sbjct 378337 GACACATCAGACTCCAATTTTCATTTCTCTCAACCCTCTTCATGAACAAATCTGGTATCC 378396 Query 110639 ACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCT 110698 | | || | || | || | | | | ||||| | ||| ||| || | Sbjct 378397 ATAGAGCATAAAACAATTCTCTGGCCCTCACTTCTTCCTTTCCTGTGTTCTTCTTTAAAT 378456 Query 110699 CCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTAC 110758 ||||||| || | |||||| || ||||| || || | ||||| |||| | |||| || Sbjct 378457 CCAAAAACTCGAAGATATCAGAATGCCACGGCTCCACATAGATGGCGAATGCTCCCGGAC 378516 Query 110759 G---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAA 110815 | | ||| | || | |||||| | ||||||| ||| | ||||| | ||| |||| Sbjct 378517 GTTTATTGCCCCCTTGATCAACATATCTTGCTGTGTTATTATACACCCTCAACATCGGAA 378576 Query 110816 TAATTCCATCGGATTGACCATTTGTACC 110843 | ||||| || |||||||||||| Sbjct 378577 CGAGTCCATTTGAAATACCATTTGTACC 378604 >seq149 Length=636072 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/112 (78%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAA--GCAAAGTCCAGGCATGAGTCCTCTTTT 119572 ||||||| | ||| ||||| ||||||||||| |||| || |||||||| ||||| || Sbjct 239461 CTTCATCTCTAGAAATGAGTTCATTACTGAAAGTCAAA--CCGGGCATGAGACCTCTCTT 239404 Query 119573 CTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624 ||| | ||| ||||| | | |||||| ||||| ||||| || || || ||| Sbjct 239403 CTTCATCCAGAAGATAGAAGCAAAACTACCAGAGAAGAAAATCCCTTCAACA 239352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588936280931000