Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq54 125 8e-24 seq149 84.2 3e-11 >seq54 Length=946213 Score = 125 bits (138), Expect = 8e-24 Identities = 258/382 (68%), Gaps = 20/382 (5%) Strand=Plus/Minus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 ||||| ||||||||| | ||| || | | || || | ||| | |||||||| ||||| Sbjct 13125 GATCTGACGATCAAATCTACCGGGTCTTAACAGAGCTTTATCCAAAATATCAACTCGATT 13066 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAG 9304 || || || | ||||||| | ||| ||| |||||||||||| || ||||| Sbjct 13065 GGTTGCAGCTAACACAACAACATTGGTTGTTGTATTAAAACCATCCATTTCAACTAAAAG 13006 Query 9305 TTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCG------ 9358 |||||||| || | |||| ||||| | ||| ||| |||||| Sbjct 13005 TTGGTTAAGTGTGTTTTCCTGTTCAGAGTG---------ACCTCCAAAACTGCGACCTCC 12955 Query 9359 TTGCTTTC---CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415 | ||||| | || |||||||| ||||| ||||| | || |||||| || || || Sbjct 12954 TCTCTTTCTACCAACAGCATCAATTTCATCGATGAACAGGATGCATGGTGCATGTTTCCG 12895 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || || ||| | ||| ||||||||| | || ||||| ||||||||||||| ||| Sbjct 12894 AGCCATAGAAAACATATCACGAACCCTTGAAGGACCAACACCGACAAACATCTCCAAAAA 12835 Query 9476 GTTTGCGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534 | | | || ||| | ||||| || || || | ||| || || ||||| |||| Sbjct 12834 TTCAGAACCAGAGACAGT-TATGAAAGGAACGTTGGCTTCGCCGGCTGTGGCTTTAGCGA 12776 Query 9535 GAAGAGTCTTACCCGTACCTGG 9556 |||| || ||||| ||||| || Sbjct 12775 GAAGTGTTTTACCTGTACCAGG 12754 >seq149 Length=636072 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 117295 TCATCTCGGGAAATAAGTTCATT--TGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| ||||| |||||||| ||| | || | || ||||||||||| | ||||| Sbjct 239459 TCATCTCTAGAAATGAGTTCATTACTGAAAGTCAAA--CCGGGCATGAGACCTCTCTTCT 239402 Query 117353 TCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| ||| | |||| ||| || | || |||||||| || || || ||| ||||| Sbjct 239401 TCATCCAGAAGATAGAAGCAAAACTA-CCAGAGAAGAAAATCCCTTCAACAGCAGCAAAT 239343 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 |||| || |||||| | || | | | ||| || ||| ||| | | ||||| | Sbjct 239342 GCAACAATGCGCTCTCCAAATGTGGCCGTCTTACTGGCAATCCACTGAAGGGCCCAATCT 239283 Query 117472 GCCTTCTTCTCAATACATGGTACAGT 117497 |||||||||| | ||| |||| ||| Sbjct 239282 GCCTTCTTCTTTACACAGGGTAAAGT 239257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589941013169800