Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq221 167 5e-36 seq64 132 1e-25 >seq221 Length=486136 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||||||||| |||||||| |||||||||||||| |||||||||| |||||| | || || Sbjct 79270 CAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCGTC 79329 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | || || ||||| ||||| | |||||| || ||||| || || || |||||||| Sbjct 79330 CTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTGTC 79389 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||||||| || || || ||||| || |||||| ||| ||||| | || | || Sbjct 79390 TTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTATGGT 79449 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||||| || | |||||||| || | ||||||| Sbjct 79450 CTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTT 79484 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || || ||||| || | ||| || | || ||||| ||||||||||| Sbjct 78374 GTAGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCA 78433 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || || |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 78434 GCAAAGATCAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTT 78493 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || ||||| |||||||| || ||| ||||| ||||| | || || || ||||| || Sbjct 78494 ACATTCTCTATGGTGTCGGAGGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTC 78553 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 78554 TTGACGAAGATCTGCAT 78570 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || || || || || ||||| || | ||| || | || ||||| Sbjct 78590 ACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCC 78649 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| || || |||||||| ||||| || |||||||||||||| Sbjct 78650 AGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCTTGG 78709 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || |||||||| ||||| ||| ||| ||||| ||||| | || || Sbjct 78710 ATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAGGGTGATGGTTTTG 78769 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 78770 CCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || || || || || ||||| || | ||| || | || ||||| Sbjct 78818 ACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCC 78877 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| || || |||||||| ||||| || |||||||||||||| Sbjct 78878 AGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCTTGG 78937 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || |||||||| ||||| ||| ||| ||||| | ||| | || || Sbjct 78938 ATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAAGGTGATGGTTTTG 78997 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 78998 CCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 >seq64 Length=1946208 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| ||||| || | || || || |||||||||||||| |||| | || Sbjct 785706 TCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGATAAGGT 785765 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || || || ||||| || | ||| || || ||||| ||||| || Sbjct 785766 ACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGAATACC 785825 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| || ||||| |||||||| || || || || || Sbjct 785826 TTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACCTCTAG 785885 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTT 195148 ||||| || || || || | || || ||||| | ||||||| ||||| Sbjct 785886 GGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTT-TGGTT 785934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109404908817965