Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq219 389 4e-103 seq149 123 3e-23 seq13 104 3e-17 >seq219 Length=603346 Score = 389 bits (430), Expect = 4e-103 Identities = 971/1481 (66%), Gaps = 31/1481 (2%) Strand=Plus/Plus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| ||||||||||||||| ||||| ||||| || | ||| | ||||| | || || Sbjct 377166 GCTGGTTTTGTTCGTAAATAGTACATGCCAGTTTTCAGACCCATTTTCCATGCGTAAAAG 377225 Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123 || || |||||||| |||| | ||||||| | ||| || |||| || ||||| Sbjct 377226 TGTATGGATGTTAATTTTCCATAATTTGGTTCTGCGACATGTATGTTAAATGACTGACTT 377285 Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCC 47183 || || ||||| || ||||| || || ||||| | | | | | | |||||| Sbjct 377286 TGGTCTATAAAGGCTCCTCTGTCCGCAGCCATTTGAATTGTTGTCTTGACGGAAATCTCC 377345 Query 47184 CATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA--GATT-AGTATTTTGAATAGAT 47240 |||||||||||||| | | | | ||||||| || | | || | | || ||||| || Sbjct 377346 CATACTGTTTTATACAGATCTCTGATGTCTTTGGGTATTGCTTCAATGTTCTGAATGGAA 377405 Query 47241 CCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaat 47300 || ||| | |||||| || || | ||| | ||| || | || ||| || Sbjct 377406 CCATTGTTATGTATAATGAGATTCTTCATTTCTTCATCCCATAGATCCGCTTGAGTCAAA 377465 Query 47301 gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATAT 47360 | ||||||||||| | || || | |||||| |||||||| | |||| | || Sbjct 377466 TCTGTTAAAAGATGATGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAA 377525 Query 47361 ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCT 47420 || || |||| | ||||| | |||||||||||||| | |||||||| || || || Sbjct 377526 ATGTTTGATGTAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCA 377585 Query 47421 GTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNN 47480 || ||||| | || | || | | ||| | | |||| ||| || | Sbjct 377586 GTGGGCATTGGCGCTAATAGAAGGGAATTACGAAGACCATGCTTTGCAATTTTTTCTTTA 377645 Query 47481 NNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATT 47540 ||||||||||||||||| || ||||| | ||| || || ||||| Sbjct 377646 AGAGCAGCCCAATCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATC 377705 Query 47541 CCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCA 47600 |||| || ||| || | || || | ||| ||| | | | || | ||| Sbjct 377706 CCTTGGCTAGCAGGACTTCCCTCGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCA 377765 Query 47601 CAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTT-----TTATGTTTAGAT 47655 |||||||| || | |||| ||||| || ||||||||||||| ||| || | || Sbjct 377766 CAACTTGCCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTA-ATAT 377824 Query 47656 TCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTT 47715 | | ||||| | | || | || | |||| ||| || ||||| | Sbjct 377825 TGC---CTTCTCACTCT-CATACGGTAATCTCATAAGAACAAATGCATCCGCTAATCCCT 377880 Query 47716 GAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGAT 47775 |||| || |||||||| || || || | |||| || | || || |||| |||| Sbjct 377881 GAACGCCGATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGAT 377940 Query 47776 ATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTA 47835 | ||| | ||| |||||||| || ||| | |||| | | Sbjct 377941 AAAAGTTGACATCAATAATTTTGTTCAGATTTTGTGTAACAGTTTTAGTTACTTCTTTCA 378000 Query 47836 ATTTATTAAAATCAAACTTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGAT 47895 ||| || ||||| || || || ||| ||||||| |||| || ||||| || || |||| Sbjct 378001 GTTTTTTGAAATCGAATTTTTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGAT 378060 Query 47896 TACATACAGCTACCTCATTTG--GATTAGTATATTGTATTATTTCAGCACATAGATTACC 47953 | || || || ||||||| | ||| ||||||| | ||||||| ||| | ||||| Sbjct 378061 TGCACACGGCAACCTCATCTTCCGAT--GTATATTCAACAATTTCAGTACACAAATTACT 378118 Query 47954 ACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAG 48013 ||||||||||| || | ||||| |||||| | |||||||||| || ||||| || Sbjct 378119 GCATTTGATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAG 378178 Query 48014 CATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGC 48073 ||| | || || |||||||| | || | |||||| || | |||||| | || ||| Sbjct 378179 CATGTATGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCTTTCCATAATATCTGAGC 378238 Query 48074 CTTTA------TAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTC 48127 || | ||| ||| || || ||||| ||||| ||| ||| || Sbjct 378239 GCGTACTTGCCTGACAAATCTG------TTTTCTTGTTCATATTTCTCATACAACGCTTC 378292 Query 48128 AAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCA 48187 |||||| || || || || || | ||| ||||| | || |||||||||| ||| Sbjct 378293 AAATTCTTCACCGTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAGACTCCA 378352 Query 48188 ATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAA 48247 || |||| | | || || |||| || | |||||||||||| ||||| ||| || Sbjct 378353 ATTTTCATTTCTCTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATAAAACAA 378412 Query 48248 ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTA 48306 || || | || | |||||| || || | ||| | ||||| | ||| ||| || | | Sbjct 378413 TTCTCTGGCCCTCACTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAA-AAACTCGAAGA 378471 Query 48307 TATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTT 48366 |||||| |||||| || || | ||| || || | | | || || |||||||| || |||| Sbjct 378472 TATCAGAATGCCACGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCCTT 378531 Query 48367 GATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATA 48426 |||| | |||||| || || || ||||| || || ||||| || || | |||||||| | Sbjct 378532 GATCAACATATCTTGCTGTGTTATTATACACCCTCAACATCGGAACGAGTCCATTTGAAA 378591 Query 48427 TACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA 48467 ||||||| || || | || ||| |||| ||||||||||| Sbjct 378592 TACCATTTGTACCAGCTATGTAAGTTCCTTTAGCTCTTATA 378632 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 48926 tttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATC 48985 |||||| ||||| ||||||||||||||||||| | | |||||||| ||||||||||| Sbjct 379396 TTTTTTAGTTTCCTTATGAAGATTAGATATAGCAAGCCGGGCAGCTAAAATAGCATAATC 379455 Query 48986 TGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGT 49045 ||||| || || |||| | | | || ||||| | |||| ||||| || Sbjct 379456 GGGATGGTCCGTAGTCATTGTAGCTGCTGTCTCAGCTGCAAGATTATCCAATTCCACTGT 379515 Query 49046 AGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATA 49088 ||| ||||| | ||||||||| || || |||| || |||| Sbjct 379516 AGTAACACCAGAATATATTCCACTTATGACCTTCAGTGTTATA 379558 >seq149 Length=636072 Score = 123 bits (136), Expect = 3e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || |||||| || | ||||||| || || ||||| ||||| || ||||| || || Sbjct 239459 TCATCTCTAGAAATGAGTTCATTACTGAAAGTCAAACCGGGCATGAGACCTCTCTTCTTC 239400 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | |||||| ||||||||||| ||||| ||||| || ||||| || || ||||| ||| Sbjct 239399 ATCCAGAAGATAGAAGCAAAACTACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATGCA 239340 Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164 || | | |||||| | | || ||| | |||||| | || |||||||| ||| Sbjct 239339 ACAATGCGCTCTCCAAATGTGGCCGTCTTACTGGCAATCCACTGAAGGGCCCAATCTGCC 239280 Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 ||||| |||||||| || | ||||| |||| ||| || || Sbjct 239279 TTCTTCTTTACACAGGGTAAAGTCTCAATAGCATTGAACAG 239239 Score = 113 bits (124), Expect = 5e-20 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 |||||||| || ||||||||||| ||||| |||||||||||||| || || ||||| | | Sbjct 238709 TTAGATAAGTCAACTTCTTCAACAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGC 238650 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAATC 19546 ||||||||| |||| || || || ||||||||||||| Sbjct 238649 CATATATCAGGATACTGGATGGGGAATATAACAAATC 238613 >seq13 Length=1808754 Score = 104 bits (114), Expect = 3e-17 Identities = 233/346 (67%), Gaps = 7/346 (2%) Strand=Plus/Plus Query 136649 CCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAAAAGTTTCCAAATGGA 136708 |||||||| |||||| | ||| ||||||| || | || | ||||||| ||| |||||| Sbjct 1717068 CCAATGTTAGCAGAAGCGTGTAAATCTGTTGAAATGGCTATGAAAAAGTGTCCCAATGGA 1717127 Query 136709 ATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCACAAGAATGGAAACCAC 136768 || || | |||||||| |||||||||||| | ||||| || || || || ||||| | Sbjct 1717128 ATGTTCTCTGAAATAAAGTATGACGGAGAAAGAGTACAAGTACATAAAAAAGGAAATGAA 1717187 Query 136769 TTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAAGTTGATTATCTTAAT 136828 ||| || ||| ||| | || || |||| |||||||| | || | || Sbjct 1717188 TTTAAATATTTCTCAAGAGCTCTAAAGCCTGTAATGGCTCATAAAGTCAGTCATTTCAAG 1717247 Query 136829 GAGTATATACCTAAAGCCTTT--AAAAATGTATCATCTCTTATTTTAGATTCAGAAATAG 136886 || || | ||| | || ||| ||| | | | | | || |||||| | || | Sbjct 1717248 GATTACTTGCCTCAGGCGTTTCCTAAAGGGGTTGA--TTTAATATTAGATGCCGAGGTCT 1717305 Query 136887 TACTAGTAGA--TAAAAATA-ATAAACCATTACCATTTGGCAGTTTGGGTATACATAAAA 136943 || | ||||| |||||| | || || ||||| || || | |||||| ||||||||| Sbjct 1717306 TAATGGTAGACTTAAAAACAGGCAAGCCTTTACCTTTCGGTACTTTGGGCATACATAAAC 1717365 Query 136944 AGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATTG 136989 || |||| || ||| | | | || |||| | | || ||||| Sbjct 1717366 AGTCTGAATTCAAAGATGCTGGAGTGTGCTTATATATTTTCGATTG 1717411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562070892787800