Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq149 93.3 5e-14 seq13 91.5 2e-13 >seq149 Length=636072 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 ||||||||||| || | ||||||| || || || || ||||| | |||||| || | Sbjct 239461 CTTCATCTCTAGAAATGAGTTCATTACTGAAAGTCAAACCGGGCATGAGACCTCTCTTCT 239402 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | ||||| || || | |||||| ||||| |||||||| |||||||| || ||||||| Sbjct 239401 TCATCCAGAAGATAGAAGCAAAACTACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATG 239342 Query 37318 CTACAA 37323 | |||| Sbjct 239341 CAACAA 239336 >seq13 Length=1808754 Score = 91.5 bits (100), Expect = 2e-13 Identities = 87/109 (80%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 142805 CATACAGCAGATGGGATATCTATTAGATTTCCTAGATGTAAAAATATAAGAAATGATAAA 142864 |||||||| ||||| |||||| |||||||||||||| | | |||||| |||| ||| Sbjct 1718465 CATACAGCCGATGGTATATCTGTTAGATTTCCTAGAGTGACACGTATAAGGGATGACAAA 1718524 Query 142865 GATTGGTTATCTGCAACAAATTTACAGGAACTTATAACA-TTATATAAA 142912 ||||| | ||||||||||||| | |||| || |||| ||||||||| Sbjct 1718525 AATTGGGAAACTGCAACAAATTTGGAAGAAC-TAAAACATTTATATAAA 1718572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592276855635800