Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq445 311 7e-80 seq221 158 1e-33 seq131 131 1e-25 >seq445 Length=79264 Score = 311 bits (344), Expect = 7e-80 Identities = 682/1012 (67%), Gaps = 15/1012 (1%) Strand=Plus/Plus Query 42470 TCTATAGTCTACGACGCCATCTTCCCAAGTACCCGAAACTGGACCTGTCGCAATACCCGT 42529 |||||| || | || || |||| ||| || || ||||| || || ||| | || || Sbjct 26757 TCTATAATCAATAACACCGTCTTGCCATGTTCCTTTGACTGGTCCAGTAGCATTGCCTGT 26816 Query 42530 GAAGGGATTATTGTTTTGGTAATTGCTTACTCCGGTCCAACCTCGTCCGTACATGGCCAC 42589 ||| |||||||| | |||| | || || ||||| ||||| || ||||| || || Sbjct 26817 GAATGGATTATTTCCCTCGTAACCATTAACCCCAGTCCATCCTCGACCATACATAGCAAC 26876 Query 42590 GCCTAAAATTATTTTTTGAGGTTTCACTTTTTGTTTCAAAAGCGTTTGAACGGCATAATC 42649 || | | || |||| ||| ||| ||| || | || || | | || Sbjct 26877 ACCAACTACGATCTTTTTCGGTGACACACCTTGAGCTAACAAATATTTCACACCGAAGTC 26936 Query 42650 TGCCGTGTAATGTTCGTTTTCGTTCCATTCGGGAGCATACAGATTTGTTTGATGGCCCAA 42709 | |||||| || || |||||| | || ||||||| |||||||| ||||| Sbjct 26937 GGTTGTGTAAGTCTCTTTAGGATTCCATGCCGGTGCATACAACGGAGTTTGATGTCCCAA 26996 Query 42710 ATCTGAATTTGACCAAGCACCTTTAAAGTCATAGCTCATTAAAAATATTTTATCCAAATA 42769 | ||||||||| || ||||| || || || ||||| | || || | |||| || Sbjct 26997 AGTATCATTTGACCATGCTCCTTTGAAATCGTAACTCATAACGAAAATGTGGTCCATGTA 27056 Query 42770 GTTTTGAGCATCGTTGTAATCGACAATAGCGATTTTGTCGTCTCCCGCACTAATTGCGCT 42829 | ||| || | ||||||||||| |||||||| ||| ||||| ||||| Sbjct 27057 TTGTTGCGCTTTTGCGTAATCGACAACCTGAATTTTGTCCCATCCAGCACTGATTGCTGA 27116 Query 42830 AGTCAATTCGTA---TTTGCGATTAGTTTCGTTTTCTAGTTCGTCCAGCATGTCGCGCAA 42886 |||| |||||| ||| | | | || | | | || || ||||| || || || Sbjct 27117 GGTCAGTTCGTACGTTTTACCAGTGGTAGCAGAT---AAATCATCAAGCATTTCACGTAA 27173 Query 42887 TTCTCGTAACAAAACTACATACGTAAG-ACCGTCATTTTGAGGATCTCCAATTGTC-GGA 42944 |||| | |||| ||| |||||| | | ||| || || ||| | ||| || Sbjct 27174 TTCTTCCATCAAA-CTA---ACGTAAACAGCACCATCTTCTGGGCTTCCGAG-GTCTGGG 27228 Query 42945 TTAGCTCCTTTACCACCGGGAAATTCCCAATCAATATCGACGCCGTCAAAAAATTTCCAA 43004 ||||| ||||||||||| || || ||||| |||||||| || |||||||| |||||||| Sbjct 27229 TTAGCACCTTTACCACCAGGGAACTCCCAGTCAATATCAACACCGTCAAAGAATTTCCAG 27288 Query 43005 GTGAGCAAAAACTCACGTACTGAATCCACAAATATTTTACGCTTGTTTGCATCGCTGAAA 43064 || | | || || || || || |||||| | ||||| | ||| |||| Sbjct 27289 GTTAAAAGGAAATCTTTAACAGATTCTACAAATCGCTGTCGCTTACTCTTATCAGTGAAG 27348 Query 43065 AAATAAAACGGGTCGGACAATGTCCATCCACCTATCGAAGGTAACA-CTTTAAGATGAGG 43123 || | || || || | || ||||| ||||| || || ||||| | ||| ||| | || Sbjct 27349 AAGAAGAAAGGATCAGCTAAAGTCCACCCACCAATTGATGGTAAAATCTTCAAG-TCTGG 27407 Query 43124 GTTAGCTTTTTTGGCTGCCATTAATTGACCAAAGTTGCCTTTGTACGGTTCATTCCACGA 43183 ||||||| ||| || ||| ||||||||||| |||||||| || ||||||||||| || Sbjct 27408 TTTAGCTTGTTTCAATGACATCAATTGACCAAAATTGCCTTTATAAGGTTCATTCCAGGA 27467 Query 43184 GGAAACACCTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGTGTATGGAAACTTTGAA 43243 ||| | |||| |||| |||||||||| ||| ||||| ||||| || |||||||| || || Sbjct 27468 GGATAGACCTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGATCATGGATGGAAACCTTAAA 27527 Query 43244 GTCGCTTCGACCCGCACAAGATTTTTGAAGAGCTTCAAAACTGCCAGGAATAGATTTTAA 43303 || ||||| || || || || |||| |||||| || || |||||| Sbjct 27528 ATCTTCCCGACCACTGCATGAACGCTGTAGTGCTTGAAAACTTCCCTCGATTTCTTTTAA 27587 Query 43304 ACTGTCATTAATGCCGTCACCGCCGCATATCGGAATAAATCCGTACAACAAATGAGACAA 43363 ||||||||||||||| ||||| || |||||||| || || ||||| | | ||| | | Sbjct 27588 ACTGTCATTAATGCCATCACCCCCACATATCGGTATGAAACCGTAAAGAAGATGTGTGAG 27647 Query 43364 ATTGGGTAAAGGCACTTTGTTGACAGGAAATGAACGACCGTATACGCCCCATTCTACAAA 43423 ||| || | ||||| | ||| || ||| | |||||| |||||||| || || Sbjct 27648 ATTTGGAATCGGCACACGATCGACGGGGAATTTCCTGGGGTATACACCCCATTCAACGAA 27707 Query 43424 ATAAGCGGCCACGGCTTTATCGGTGCCCAATTCGAAAGGTTTATTGTTTTCT 43475 ||||| | ||| ||||| | | || ||| ||||| || |||||| Sbjct 27708 GTAAGCTCCAACGACTTTACCAGACGTTTGTTTGAATGGTTTGTTCTTTTCT 27759 >seq221 Length=486136 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| ||||| | |||||| ||||| |||||||| || |||||||||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | || |||||||| || |||||||| ||||| || || ||||| || || Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| ||||||||||| ||| ||| |||| | ||| || || | ||| ||| Sbjct 79376 ATTCCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACT 79435 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | || || || || | ||||||||||| |||||||| Sbjct 79436 TCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCAT 79482 >seq131 Length=856804 Score = 131 bits (144), Expect = 1e-25 Identities = 185/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 101214 ATCATTTTTATTTAATATACTAGACATT----TCCTCCTCTTAAACGTAAAACTAAATGA 101269 || |||| | | |||||| | |||||| ||| |||| || | || ||||| || Sbjct 307852 ATAATTTATTTGTAATATTATTGACATTAGACTCCCCCTCGCAATCTTAGTACTAAGTGC 307911 Query 101270 AGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTA 101329 ||||| ||||| ||||| || || ||||| | | || | |||| || || ||||| Sbjct 307912 AGGGTTGATTCCTTTTGAATGTTATAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTG 307971 Query 101330 CCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 101389 || ||||| || | | ||| || || || ||||| ||||| || || || || || | Sbjct 307972 CCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCT 308031 Query 101390 TTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAA 101449 || ||| | || | ||||| || | ||| ||||| | ||||| |||||| || ||||| Sbjct 308032 TTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAAT 308091 Query 101450 GTTTTTACAAATATCTGCAT 101469 ||||||||||| || ||||| Sbjct 308092 GTTTTTACAAAGATTTGCAT 308111 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | || || || || ||||| ||||| ||||| || |||||||| | Sbjct 308113 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308172 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || || ||||| || ||||| || | | ||| || || || ||| Sbjct 308173 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308232 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || ||| ||| | || | ||||| || | ||| ||| Sbjct 308233 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308292 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| |||||| || ||||| ||||||||||| || ||||| Sbjct 308293 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | || || || || ||||| ||||| ||||| || |||||||| | Sbjct 308341 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308400 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || || ||||| || ||||| || | | ||| || || || ||| Sbjct 308401 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308460 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || ||| ||| | || | ||||| || | ||| ||| Sbjct 308461 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308520 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| |||||| || ||||| ||||||||||| || ||||| Sbjct 308521 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | || || || || ||||| ||||| ||||| || |||||||| | Sbjct 308569 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308628 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || || ||||| || ||||| || | | ||| || || || ||| Sbjct 308629 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308688 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || ||| ||| | || | ||||| || | ||| ||| Sbjct 308689 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308748 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| |||||| || ||||| ||||||||||| || ||||| Sbjct 308749 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396252344076015