Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq221 109 4e-19 seq131 109 4e-19 seq64 104 2e-17 seq445 102 6e-17 >seq221 Length=486136 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| || || |||||||||||| |||||||| || ||| | || Sbjct 79265 AGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGT 79324 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| || || || ||||| |||| ||| || ||||| | || | ||||| Sbjct 79325 CCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCT 79384 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | || || || | || || |||| || Sbjct 79385 TTGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTT 79444 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | |||||||||||||||||||| Sbjct 79445 ATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCAT 79482 >seq131 Length=856804 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || |||||||| ||||||||||| || | || | || || Sbjct 308131 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308190 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| |||||||| || |||| ||| || || | ||||| || |||||||| Sbjct 308191 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308250 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || | || || |||| || ||||||||| Sbjct 308251 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308310 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||||||||| || |||||| Sbjct 308311 CCAGTTAATGTTTTTACAAAGATTTGCATC 308340 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || |||||||| ||||||||||| || | || | || || Sbjct 308359 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308418 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| |||||||| || |||| ||| || || | ||||| || |||||||| Sbjct 308419 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308478 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || | || || |||| || ||||||||| Sbjct 308479 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308538 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||||||||| || |||||| Sbjct 308539 CCAGTTAATGTTTTTACAAAGATTTGCATC 308568 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || |||||||| ||||||||||| || | || | || || Sbjct 308587 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308646 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| |||||||| || |||| ||| || || | ||||| || |||||||| Sbjct 308647 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308706 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || | || || |||| || ||||||||| Sbjct 308707 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308766 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||||||||| || |||||| Sbjct 308767 CCAGTTAATGTTTTTACAAAGATTTGCATC 308796 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || |||||||| ||||||||||| || | || | || || Sbjct 308815 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308874 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| |||||||| || |||| ||| || || | ||||| || |||||||| Sbjct 308875 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308934 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | || || | || || |||| || |||||||| Sbjct 308935 ATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTG 308994 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||| ||||||||||||||| || Sbjct 308995 CCAGTTAAGGTTTTCACAAAAATCTGCATCTTG 309027 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||| || |||||||| || | || | || || |||||||| |||||||| Sbjct 307921 TCCTTTTGAATGTTATAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAG 307980 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||| ||| || || | ||||| || |||||||| ||||| ||| ||| Sbjct 307981 ATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTC 308040 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | || || |||| || ||||||||||| || || ||||||||| Sbjct 308041 TCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACA 308100 Query 48756 AAAATCTGCATC 48767 || || |||||| Sbjct 308101 AAGATTTGCATC 308112 >seq64 Length=1946208 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48537 TCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCA 48596 || || || || || | |||||| | ||| | || || |||||||||||||| || Sbjct 785698 TCACCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCG 785757 Query 48597 GATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656 |||| | ||| | || ||||| || || || || ||||||| |||||| ||||| | Sbjct 785758 GATAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGT 785817 Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716 |||| || |||||||| ||||| |||||| | | | || || ||||| Sbjct 785818 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCA 785877 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | ||||| ||||| ||||| | || || || ||||||||||| Sbjct 785878 ACCTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCAT 785927 >seq445 Length=79264 Score = 102 bits (112), Expect = 6e-17 Identities = 425/662 (64%), Gaps = 9/662 (1%) Strand=Plus/Minus Query 27764 CCCATACCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGCGGAGACGGT 27823 || || |||||||| |||||| | || ||||| || | || || || || || || || Sbjct 27659 CCGATTCCAAATCTCACACATCTTCTTTACGGTTTCATACCGATATGTGGGGGTGATGGC 27600 Query 27824 ATCAACGATAGCCTAAAACAGATCCCCAATTCTTTTGAGGTCCTCCAAAAGTCATGCTCA 27883 || || || || ||||| | ||| |||| | | || || |||||| Sbjct 27599 ATTAATGACAGTTTAAAAGAAATCGAGGGAAGTTTTCAAGCACTACAGCGTTCATGCAGT 27540 Query 27884 AACCGAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGCAAAAACCGCAA 27943 || | || |||| || ||| || ||| |||| || | || ||||| ||| Sbjct 27539 GGTCGGGAAGATTTTAAGGTTTCCATCCATGATCCTTGGGCTGCTTTACAGAAACCTCAA 27480 Query 27944 AAGGGTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGTTGATGGCCATC 28003 | ||| || | ||||| || || || || || || ||||| || |||||| | | Sbjct 27479 AGAGGTCTATCCTCCTGGAATGAACCTTATAAAGGCAATTTTGGTCAATTGATGTCATTG 27420 Query 28004 AAACGACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGACTCTGAGC-GA 28062 |||| | | || || | || | || || ||||||||||||||| | ||| || Sbjct 27419 AAACAAGCTAAACCAGACTTGAAGATTTTACCATCAATTGGTGGGTGGACTTT-AGCTGA 27361 Query 28063 TCCATTCTTTTTTATGCAC-GACCCGGCCAAGCGTGCCGTG-TTTGTAGAGTCTGTGCGC 28120 ||| ||||| || | ||| || | ||||| | | | |||||||| ||||| Sbjct 27360 TCCTTTCTTCTTCTT-CACTGATAAGAGTAAGCGA-CAGCGATTTGTAGAATCTGTTAAA 27303 Query 28121 GAATTTCTGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAGTTTCCGGGT 28180 || || || ||| ||||| ||||||||||| || ||| | ||||||||||| || ||| Sbjct 27302 GATTTCCTTTTAACCTGGAAATTCTTTGACGGTGTTGATATTGACTGGGAGTTCCCTGGT 27243 Query 28181 GGAAAGGGAGCCAACCCCGCGATCGGTAACCCCGACATTGACGCAAAAACGTACACCGCG 28240 || || || || ||||| | |||| | ||| || || || ||| Sbjct 27242 GGTAAAGGTGCTAACCCAGACCTCGGAAGCCCAGAAGATGGTGC---TGTTTACGTTAGT 27186 Query 28241 CTGTTGCGCGAACTAAGATTTATGCTGGACGAGTTGGCGGaaaaaaaCGATCGCGTCTAC 28300 || || ||| || | ||||| || || || | | | | | | ||| Sbjct 27185 TTGATGGAAGAATTACGTGAAATGCTTGATGATTTATCTGCTACCACTGGTAAAACGTAC 27126 Query 28301 CAACTAACCACCGCTATTAGCGCCGGGCATGATAAAATACAAGTGGTCAACTACGCTTCG 28360 |||| ||| | || || || || || || ||||| || || ||| | ||||| Sbjct 27125 GAACTGACCTCAGCAATCAGTGCTGGATGGGACAAAATTCAGGTTGTCGATTACGCAAAA 27066 Query 28361 GCCCAAAAACATCTGGACCACATTTTCGTTATGAGTTACGATTTTAGGGGCGCCTGGTCC 28420 || ||| || | ||||||||||||||||||||||||||||||| | || || ||||| Sbjct 27065 GCGCAACAATACATGGACCACATTTTCGTTATGAGTTACGATTTCAAAGGAGCATGGTCA 27006 Query 28421 AA 28422 || Sbjct 27005 AA 27004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380912552757585