Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq149 114 2e-20 seq126 91.5 3e-13 >seq149 Length=636072 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||| || ||||| ||||| || ||||| |||||||| || |||||| || |||||| Sbjct 239108 TACATTTCCGAGTGAACATTTTCCATAGCAATCTGGAAACCATAGAAGCATCTCGCCTCA 239049 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 |||||| ||||| |||||| | || | ||||||||||| ||||| |||||||| Sbjct 239048 GTCACCTGAACTTCCTGGGAGAAGCGTTCTACGAGATTCTCATTTACTATACCATCTGAT 238989 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAA 48572 || ||||| || || | ||||| |||| Sbjct 238988 GCCGCAAAAAACGCCAATACATGCTTAA 238961 >seq126 Length=513897 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| | || |||||| ||||| ||||| | |||||||||||| || ||||| | ||| Sbjct 338275 CTTCAACAGCTTCACCTTCTCTTCCAGTTTAGAGATGCGTTCCAGCTTCCGCCGTCTGCA 338334 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 ||||| || |||| ||||||| ||||||| ||||| ||||| | |||||| Sbjct 338335 TTTGGAAGCCGCCACTCGGTTCCTCTGTCTCTTCCGTTCTAGTTTGATCCTCTCCTGGGT 338394 Query 241609 CTCCATGTCGATCGGAGA 241626 ||||||||||| || || Sbjct 338395 GTCCATGTCGATGGGCGA 338412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931469979756800