Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq219 127 4e-24 seq149 95.1 2e-14 >seq219 Length=603346 Score = 127 bits (140), Expect = 4e-24 Identities = 179/249 (72%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 ||||| | ||||||||| || | || |||||||| | |||||||||||||||| Sbjct 378291 TCAAATTCTTCACCGTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAGACTC 378350 Query 222014 CAGTGCTTGTTGTCTTTGA-CCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 || | | || ||| | | |||||| |||||| | || || ||||| || || | ||| Sbjct 378351 CAATTTTCATT-TCTCTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATAAAA 378409 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 | ||||||| || | || ||| || |||| ||| | | |||||||||||| || Sbjct 378410 CAATTCTCTGGCCCTCACTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAAAAACTCGAA 378469 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 || |||| ||||||||||||| ||||| ||| | || || || || || ||||| || Sbjct 378470 GATATCAGAATGCCACGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCC 378529 Query 222193 CTGATCCAC 222201 ||||| || Sbjct 378530 TTGATCAAC 378538 >seq149 Length=636072 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/173 (73%), Gaps = 9/173 (5%) Strand=Plus/Plus Query 25582 CATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAAT 25641 || ||| | ||| | || ||||| || ||||| || || ||||||||||| || |||||| Sbjct 238954 CACTTTATTAAGCATGTATTGGCGTTTTTTGCGGCATCAGATGGTATAGTAAATGAGAAT 239013 Query 25642 CTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGT 25698 || || | ||| || |||||| ||| ||| ||||| | || ||||| ||| Sbjct 239014 CTCGTAGAACGCTTCTCCCAGGAAGTTCAG---GTGACTGAGGCGAGATGCTTCTATGGT 239070 Query 25699 TTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||||| || || |||||||| ||||| || ||||| | |||||||| Sbjct 239071 TTCCAGATTGCTATGGAAAATGTTCACTCGGAAATGTATTC---ACTTCTGAT 239120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928782161028800