Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq219 196 6e-45 seq54 87.8 2e-12 seq149 84.2 3e-11 >seq219 Length=603346 Score = 196 bits (216), Expect = 6e-45 Identities = 718/1107 (65%), Gaps = 27/1107 (2%) Strand=Plus/Minus Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || ||||||||| ||| |||| | |||| ||| | | || | ||| |||||| Sbjct 378604 GGTACAAATGGTATTTCAAATGGACTCGTTCCGATGTTGAGGGTGTATAATAACACAGCA 378545 Query 75563 CGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619 | ||||| |||||| ||| | || ||| | |||| |||| |||| || Sbjct 378544 AGATATGTTGATCAAGGGGGCAATAAACGTCCGGGAGCATTCGCCATCTATGTGGAGCCG 378485 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 |||||| | |||||| | ||||| | || ||| ||| ||| | ||||| | Sbjct 378484 TGGCATTCTGATATCTTCGAGTTTTTGGATTTAAAGAAGAACACAGGAAAGGAAGAAGTG 378425 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || ||||| | |||| | || ||||| ||||| | ||||||||| |||||||| Sbjct 378424 AGGGCCAGAGAATTGTTTTATGCTCTATGGATACCAGATTTGTTCATGAAGAGGGTTGAG 378365 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || | ||| ||| | ||||| | || ||||| || | || Sbjct 378364 AGAAATGAAAATTGGAGTCTGATGTGTCCCCATAACTGTCCAGGGCTTTATGATTGTTAC 378305 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGA---GCCAATGCG 75856 ||||| || |||||||| | || || |||||| | || ||| | || || Sbjct 378304 GGTGAAGAATTTGAAGCGTTGTATGAGAAATATGAACAAGAAAACAGATTTGTCAG-GCA 378246 Query 75857 ACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 | |||| || | ||| || ||||| || ||| | || | || || ||||| || Sbjct 378245 A--GTACGCGCT-CAGATATTATGGAAAGCCATTATTGAAGCGCAAGTCGAAACTGGTAC 378189 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 ||||| ||||| ||||| ||||| ||||||| || ||||| ||||| ||| | ||||| Sbjct 378188 TCCATACATGCTGTACAAAGATGCATGTAACAGAAAAAGTAATCAAAAAAATCTTGGAAC 378129 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035 ||||| || ||| | || || |||||| | || || ||| | |||||| || Sbjct 378128 TATCAAATGCAGTAATTTGTGTACTGAAATTGTTGAATATACATCGGAAGATGAGGTTGC 378069 Query 76036 TGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTT 76095 || |||||| | || ||||| || || | || ||| |||| | | | || Sbjct 378068 CGTGTGCAATCTCGCCTCAATAGCTCTAAATATGTTTGT---TGAAAACAAA---AAATT 378015 Query 76096 TGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCAT 76155 |||| ||||||| | ||| | || || | |||||| ||||||| ||| | | || Sbjct 378014 CGATTTCAAAAAACTGAAAGAAGTAACTAAAACTGTTACACAAAATCTGAACAAAATTAT 377955 Query 76156 TGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTAT 76215 ||| || |||||||| || | ||| ||| || |||||| |||||| || || Sbjct 377954 TGATGTCAACTTTTATCCTGTACCGGAGGCGAAAAACTCGAATATGAAACACAGGCCCAT 377895 Query 76216 TGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT-TTGTGCCGCTACGCATTTGATT 76274 |||| | || ||||| || | ||||||| |||| || || || ||| | | ||| Sbjct 377894 TGGTATCGGCGTTCAGGGATTAGCGGATGCATTTGTTCTTATGAGATTAC-CGTATGAGA 377836 Query 76275 CAGATGAAGCCAAGGAGA-TGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTG 76333 || |||| ||| | | ||| | || |||||||| || ||| ||| | || Sbjct 377835 GTGA-GAAGGCAATATTACTTAATCAGCAAATATTTGAAACGATCTATTACGGTGCGCTC 377777 Query 76334 GAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCC 76393 ||||| |||||||| || || || | ||| || || | ||||| ||| Sbjct 377776 GAGGCAAGTTGTGAGTTAGCCGAGAGAGATGGTGTTTACAGCACTTACGAGGGAAGTCCT 377717 Query 76394 GCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA-AGCTCAACTACGA 76452 || ||||||| | || |||| ||||||||| | | ||| || || | || Sbjct 377716 GCTAGCCAAGGGATTCTACAGTACGATATGTGGAACAAAACACCCACAGATCTT-TGGGA 377658 Query 76453 CTGGGATGTTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATG 76510 |||| || ||| || ||| || ||| || | ||||||||||| ||| | | Sbjct 377657 TTGGGCTGCTCTTAAAGAAAAAATTGCAA--AGCATGGTCTTCGTAATTCCCTTCTATTA 377600 Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 || |||||||| || ||||||||||| ||||| | || |||||||||| |||||||| Sbjct 377599 GCGCCAATGCCCACTGCCTCCACCGCTCAAATACTAGGAAATAATGAATCGTTTGAACCT 377540 Query 76571 TACACAACAAACATCTACCTGAGAAGA 76597 | ||| ||||||| |||| ||| || Sbjct 377539 TTTACATCAAACATTTACCAAAGACGA 377513 >seq54 Length=946213 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || || || || ||||| ||||| || || ||| | || || || ||| Sbjct 12754 CCTGGTACAGGTAAAACACTTCTCGCTAAAGCCACAGCCGGCGAAGCCAACGTTCCTTTC 12813 Query 175375 ATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || | || ||||| | | ||| ||||||||||||| ||||| ||| | |||||| Sbjct 12814 ATA-ACTGTCTCTGGTTCTGAATTTTTGGAGATGTTTGTCGGTGTTGGTCCTTCAAGGGT 12872 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| ||| | ||| || || || || || |||||| || | ||||| ||||| || Sbjct 12873 TCGTGATATGTTTTCTATGGCTCGGAAACATGCACCATGCATCCTGTTCATCGATGAAAT 12932 Query 175494 TGATGCGGTGGG 175505 |||||| || || Sbjct 12933 TGATGCTGTTGG 12944 >seq149 Length=636072 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCT 65064 ||| |||| ||| | |||||||||| | ||||| | | ||| ||| || ||| | Sbjct 239257 ACTTTACCCTGTGTAAAGAAGAAGGCAGATTGGGCCCTTCAGTGGATTGCCAGTAAGACG 239316 Query 65065 CGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124 | | || | |||||| || |||| ||||| ||| || || || |||||||| || Sbjct 239317 GCCACATTTGGAGAGCGCATTGTTGCATTTGCTGCTGTTGAAGGGATTTTCTTCTCTGG- 239375 Query 65125 TCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 | || ||| |||| | ||| |||||||| | ||||||||||| || | || | || Sbjct 239376 TAGTTTTGCTTCTATCTTCTGGATGAAGAAGAGAGGTCTCATGCCCGG--TTTGACTTTC 239433 Query 65184 A--AATGAACTTATTTCCCGAGATGA 65207 | |||||||| ||||| ||||||| Sbjct 239434 AGTAATGAACTCATTTCTAGAGATGA 239459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596529368837600