Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq131 111 2e-19 seq221 104 3e-17 seq149 98.7 1e-15 >seq131 Length=856804 Score = 111 bits (122), Expect = 2e-19 Identities = 174/245 (71%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||| ||||||||||| || || || ||||| ||| || Sbjct 308111 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308052 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||| || || || || ||||| || || ||||| || Sbjct 308051 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 307992 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | |||||| |||||| | |||||| | || | || |||||||| Sbjct 307991 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTATAAC 307932 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAAT-TGA 156060 || || ||| || | || || || ||||| ||||||| |||| || || ||| | | Sbjct 307931 AT-TCAAAAGGAATCAACCCTGCACTTAGTACTAAGATTGCGAGGGGGAGTCTAATGTCA 307873 Query 156061 ATAAT 156065 ||||| Sbjct 307872 ATAAT 307868 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||| ||||||||||| || || || ||||| ||| || Sbjct 308339 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308280 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||| || || || || ||||| || || ||||| || Sbjct 308279 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308220 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | |||||| |||||| | |||||| | || | || ||||| || Sbjct 308219 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308160 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| || | || || || || || ||||||| ||||| || Sbjct 308159 AT-TCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308113 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||| ||||||||||| || || || ||||| ||| || Sbjct 308567 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308508 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||| || || || || ||||| || || ||||| || Sbjct 308507 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308448 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | |||||| |||||| | |||||| | || | || ||||| || Sbjct 308447 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308388 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| || | || || || || || ||||||| ||||| || Sbjct 308387 AT-TCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308341 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||| ||||||||||| || || || ||||| ||| || Sbjct 308795 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308736 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||| || || || || ||||| || || ||||| || Sbjct 308735 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308676 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | |||||| |||||| | |||||| | || | || ||||| || Sbjct 308675 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308616 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| || | || || || || || ||||||| ||||| || Sbjct 308615 AT-TCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308569 >seq221 Length=486136 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| ||||| || || |||||||||||| ||| Sbjct 79026 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCTTAGAAGTCGAACCTTCA 78967 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 78966 GACACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAA 78907 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || | |||| | ||| ||||||||||| ||||| Sbjct 78906 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGA 78872 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| ||||| || || ||||||||||| ||| Sbjct 78798 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTAGAAGTCGAACCTTCA 78739 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 78738 GACACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAA 78679 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || | |||| | ||| ||||||||||| ||||| Sbjct 78678 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGA 78644 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| ||||| || || ||||||||||| || Sbjct 78570 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTAGAAGTCGAACCCTCC 78511 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || ||||| ||||| || |||||||| |||||||| ||| Sbjct 78510 GACACCATAGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATCCCTCCAGACCAA 78451 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || | |||| | ||| ||||||||||| ||||| Sbjct 78450 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGA 78416 >seq149 Length=636072 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||| | || | ||||| || || || | | ||||||||||| || || | Sbjct 239149 TTTCTTTAGGGTCCCTAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACAT 239090 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTAT 18530 |||||||||| ||||| |||| ||| || |||| ||||| | |||| || Sbjct 239089 TTTCCATAGCAATCTGGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGG 239030 Query 18531 AAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAA 18590 | || | |||||| | ||||||||| |||||||| || | | || ||||| ||||| | Sbjct 239029 AGAAGCGTTCTACGAGATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATA 238970 Query 18591 CATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCA 18637 ||| ||||| || ||| ||||| ||||| | | | | ||| ||| Sbjct 238969 CATGCTTAATAAAGTGTCTTTCACAGTCCTTTAAACTTTCCCAATCA 238923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731822644382000