Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq221 154 3e-32 seq64 141 2e-28 seq131 118 2e-21 seq149 105 1e-17 >seq221 Length=486136 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| || || | ||| | ||||| |||||| || || ||||| Sbjct 79253 ATACCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCG 79312 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || ||||||||||| || |||||||| |||| || ||||| ||| Sbjct 79313 GAAAGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGT 79372 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| ||||| ||| ||||| |||| ||| || | ||| Sbjct 79373 GGGATTCCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCG 79432 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||| ||||| || ||||| | ||||| | ||| ||||||||||| Sbjct 79433 ACTTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTT 79485 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 ||| || ||||| ||||| | |||||||| || |||| ||| || ||| || || || Sbjct 78340 AATTCCGCCTCTGAGACGGAGAACTAAATGCAAGGTAGACTCCTTCTGGATGTTGTAGTC 78399 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | ||| || | || |||| || |||||||||||||| | | |||||| || || Sbjct 78400 AGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCTGG 78459 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| ||||| |||||||| ||| | || || | ||| Sbjct 78460 AGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCTATGGTGTCGGAGGGTTC 78519 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || |||||||| ||||| || || || | || |||||||| Sbjct 78520 GACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | |||| ||| | ||| | || | || || ||| || || ||| Sbjct 78569 ATACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCA 78628 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || | || |||| || |||||||||||||| | | |||||| || || Sbjct 78629 GAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGA 78688 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| ||||| ||||||||| || | ||||| | ||| Sbjct 78689 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCG 78748 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || |||||||| ||||| || || || | || |||||||| Sbjct 78749 ACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||| ||| | ||| | |||| || || ||| || || || Sbjct 79025 ATACCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCG 79084 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || |||||||||||||| || || || | |||||||| || Sbjct 79085 GAGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGG 79144 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| || || || |||| ||| || | ||| Sbjct 79145 GGGATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCT 79204 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || || |||||||| || | ||||||| ||| |||||||| Sbjct 79205 ACCTCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | |||| ||| | ||| | || | || || ||| || || ||| Sbjct 78797 ATACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCA 78856 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || | || |||| || |||||||||||||| | | |||||| || || Sbjct 78857 GAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGA 78916 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| ||||| ||||||||| || | ||||| | ||| Sbjct 78917 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCG 78976 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || |||||||| ||||| || || || | || |||||||| Sbjct 78977 ACTTCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 >seq64 Length=1946208 Score = 141 bits (156), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||| |||||||| | || || | ||| || |||| || ||| || ||||| || || | Sbjct 785700 ACCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGA-ATATTGTAGTCGG 785758 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||| || || |||| ||||||||||| ||||| || || |||| ||| ||||| |||| Sbjct 785759 ATAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTG 785818 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| || || |||||||| || | || || | || | Sbjct 785819 GAATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAA 785878 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | ||||| |||||||||||||| |||| || |||| || ||||||||||| Sbjct 785879 CCTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTT 785930 >seq131 Length=856804 Score = 118 bits (130), Expect = 2e-21 Identities = 141/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || ||||||||||| | || ||| |||| || || || || || ||||||| Sbjct 307923 CTTTTGA-ATGTTATAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGA 307981 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | |||||| || || || || |||||||| || || || || ||| ||| ||||| Sbjct 307982 TAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCT 308041 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | || || | ||| ||||| | ||| || ||||| |||||||||||||| | || Sbjct 308042 CGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAA 308101 Query 192527 ATATCTGCAT 192536 | || ||||| Sbjct 308102 AGATTTGCAT 308111 Score = 114 bits (126), Expect = 3e-20 Identities = 140/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || |||||||| | || ||| |||| || || || || || ||||||| Sbjct 308151 CTTTTGA-ATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGA 308209 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | |||||| || || || || |||||||| || || || || ||| ||| ||||| Sbjct 308210 TAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCT 308269 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | || || | ||| ||||| | ||| || ||||| |||||||||||||| | || Sbjct 308270 CGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAA 308329 Query 192527 ATATCTGCAT 192536 | || ||||| Sbjct 308330 AGATTTGCAT 308339 Score = 114 bits (126), Expect = 3e-20 Identities = 140/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || |||||||| | || ||| |||| || || || || || ||||||| Sbjct 308379 CTTTTGA-ATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGA 308437 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | |||||| || || || || |||||||| || || || || ||| ||| ||||| Sbjct 308438 TAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCT 308497 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | || || | ||| ||||| | ||| || ||||| |||||||||||||| | || Sbjct 308498 CGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAA 308557 Query 192527 ATATCTGCAT 192536 | || ||||| Sbjct 308558 AGATTTGCAT 308567 Score = 114 bits (126), Expect = 3e-20 Identities = 140/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || |||||||| | || ||| |||| || || || || || ||||||| Sbjct 308607 CTTTTGA-ATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGA 308665 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | |||||| || || || || |||||||| || || || || ||| ||| ||||| Sbjct 308666 TAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCT 308725 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | || || | ||| ||||| | ||| || ||||| |||||||||||||| | || Sbjct 308726 CGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAA 308785 Query 192527 ATATCTGCAT 192536 | || ||||| Sbjct 308786 AGATTTGCAT 308795 >seq149 Length=636072 Score = 105 bits (116), Expect = 1e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 50115 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCT 50174 ||||||||||| || || ||| ||||||||| || || || ||| || ||| || Sbjct 239111 GAATACATTTCCGAGTGAACATTTTCCATAGCAATCTGGAAACCATAGAAGCATCTCGCC 239052 Query 50175 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 50234 || | ||||||||| |||| ||||| || | ||||||| ||| |||||||| Sbjct 239051 TCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGAGATTCTCATTTACTATACCATCT 238992 Query 50235 GATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 50294 ||||| || || || || || || | |||||||| ||| ||||| || |||||| || Sbjct 238991 GATGCCGCAAAAAACGCCAATACATGCTTAATAAAGTGTCTTTCACAGTCCTTTAAACTT 238932 Query 50295 TCCCAA 50300 |||||| Sbjct 238931 TCCCAA 238926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984411949358250