Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq221 150 3e-31 seq64 141 2e-28 seq131 107 3e-18 seq149 105 1e-17 seq148 87.8 3e-12 >seq221 Length=486136 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || || || | ||| | ||||| |||||| ||| || ||||| Sbjct 79253 ATACCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCG 79312 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| ||||||||||| || ||||| || |||| || || || ||| Sbjct 79313 GAAAGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGT 79372 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| ||||| ||||| ||| ||||| |||||||| || | ||| Sbjct 79373 GGGATTCCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCG 79432 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | ||| ||||| || ||||| | ||||| | || ||||||||||| Sbjct 79433 ACTTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTT 79485 Score = 132 bits (146), Expect = 9e-26 Identities = 173/238 (73%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 171832 GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATAT 171891 |||||| ||| || ||||| || || | |||||||| || |||| ||| || || | Sbjct 78334 GTTTCA-AATTCCGCCTCTGAGACGGAGAACTAAATGCAAGGTAGACTCCTTCTGGATGT 78392 Query 171892 TATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTT 171951 | || || || | | || |||| |||| || ||||||||||| || | | ||||| Sbjct 78393 TGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTT 78452 Query 171952 GGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011 |||| || || || ||||| || ||||| ||||| |||||||| ||| || || | Sbjct 78453 GGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCTATGGTGTCGG 78512 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | | ||| |||||||| || |||||||| ||||| || || || | ||| |||||||| Sbjct 78513 AGGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | ||||| ||| | ||| | || | || || || || || || Sbjct 78569 ATACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCA 78628 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| |||| || ||||||||||| || | | ||||||||| || Sbjct 78629 GAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGA 78688 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||||||||| || || ||||| | ||| Sbjct 78689 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCG 78748 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || |||||||| ||||| || || || | ||| |||||||| Sbjct 78749 ACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | ||||| ||| | ||| | || | || || || || || || Sbjct 78797 ATACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCA 78856 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| |||| || ||||||||||| || | | ||||||||| || Sbjct 78857 GAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGA 78916 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||||||||| || || ||||| | ||| Sbjct 78917 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCG 78976 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || |||||||| ||||| || || || | ||| |||||||| Sbjct 78977 ACTTCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || |||| ||| | ||| | |||| || || || || || || Sbjct 79025 ATACCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCG 79084 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||||||||| ||||| || | ||||| || || Sbjct 79085 GAGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGG 79144 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| |||||| || || || |||||||| || | ||| Sbjct 79145 GGGATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCT 79204 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || || |||||||| || | ||||||| || |||||||| Sbjct 79205 ACCTCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 >seq64 Length=1946208 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||||||||| || || | ||| || |||| || || |||||| || || || Sbjct 785700 ACCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGA 785759 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || | || ||||||||||| ||||| || || |||| ||| || || ||||| Sbjct 785760 TAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGG 785819 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || |||||||| || || || || | || || Sbjct 785820 AATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAAC 785879 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| |||||||||||||| |||| || |||| ||| ||||||||||| Sbjct 785880 CTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTT 785930 >seq131 Length=856804 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || |||| | || || |||||| || | || | || || ||| |||||||| || Sbjct 307885 CCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGAC 307944 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | ||| | || || || || || || ||||| || | |||||| ||||| || || Sbjct 307945 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308004 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| || || || || ||| ||| ||||| || || || || | ||| ||| Sbjct 308005 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308064 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || ||||| |||||||||||||| | || || ||||| Sbjct 308065 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || || ||| || || | || | || || ||| || ||||| Sbjct 308110 ATCCCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCA 308169 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || || || || || ||||| || | |||||| ||||| || Sbjct 308170 GACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGG 308229 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || ||| ||| ||||| || || || || | ||| Sbjct 308230 GGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCA 308289 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || ||||| |||||||||||||| | || || ||||| Sbjct 308290 ACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || || ||| || || | || | || || ||| || ||||| Sbjct 308338 ATCCCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCA 308397 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || || || || || ||||| || | |||||| ||||| || Sbjct 308398 GACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGG 308457 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || ||| ||| ||||| || || || || | ||| Sbjct 308458 GGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCA 308517 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || ||||| |||||||||||||| | || || ||||| Sbjct 308518 ACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || || ||| || || | || | || || ||| || ||||| Sbjct 308566 ATCCCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCA 308625 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || || || || || ||||| || | |||||| ||||| || Sbjct 308626 GACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGG 308685 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || ||| ||| ||||| || || || || | ||| Sbjct 308686 GGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCA 308745 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || ||||| |||||||||||||| | || || ||||| Sbjct 308746 ACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 >seq149 Length=636072 Score = 105 bits (116), Expect = 1e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 ||||||||||| || || ||| ||||||||| || || || ||| || || || Sbjct 239111 GAATACATTTCCGAGTGAACATTTTCCATAGCAATCTGGAAACCATAGAAGCATCTCGCC 239052 Query 39477 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 39536 || | ||||||||| |||| ||||| || | ||||||| ||| |||||||| Sbjct 239051 TCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGAGATTCTCATTTACTATACCATCT 238992 Query 39537 GATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 39596 ||||| || || || || || |||| |||||||| ||| ||||| || |||||| || Sbjct 238991 GATGCCGCAAAAAACGCCAATACATGCTTAATAAAGTGTCTTTCACAGTCCTTTAAACTT 238932 Query 39597 TCCCAA 39602 |||||| Sbjct 238931 TCCCAA 238926 >seq148 Length=419512 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 171945 CTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATA 172004 ||||| ||||| || || ||||| ||||| |||||||||||| ||| ||||| || Sbjct 143737 CTCTGCTGGTCCGGAGGGATTCCCTCTTTGTCTTGTATTTTAGCTTTGACATTCTCGATG 143796 Query 172005 GTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATC 172064 || || || | ||| || || || || |||||||| || || | ||||| | ||| ||| Sbjct 143797 GTGTCCGAGGGTTCGACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATC 143856 Query 172065 TGCATTTT 172072 ||||| || Sbjct 143857 TGCATCTT 143864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905074959891000