Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq54 134 4e-26 seq10 127 6e-24 seq219 113 1e-19 >seq54 Length=946213 Score = 134 bits (148), Expect = 4e-26 Identities = 315/465 (68%), Gaps = 14/465 (3%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT-TTGC-TTAA 288940 || || ||||| ||| || ||||| || || ||||||| | || | | ||| |||| Sbjct 13085 TCCAAAATATCAACTCGATTGGTTGCAGCTAACACAACAACA--TTGGTTGTTGTATTAA 13028 Query 288941 ATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTC 289000 | |||||||| ||||| ||| |||||||| | |||| |||| | ||||| Sbjct 13027 AACCATCCATTTCAACTAAAAGTTGGTTAAGTGTGTTTTCCTGTTCAGAGTG---ACCTC 12971 Query 289001 TTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCA 289060 || | | | | || ||| ||||||||||||||||||| || ||||| | | Sbjct 12970 CAAAACTGCG---ACCTCCTCTCTTTCTACCAACAGCATCAATTTCATCGATGAACAGGA 12914 Query 289061 CACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 || || | || || | || || | ||| | || | || | || | |||| || Sbjct 12913 TGCATGGTGCATGTTTCCGAGCCATAGAAAACATATCACGAACCCTTGAAGGACCAACAC 12854 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGC 289180 | ||| |||| || | |||||||||| | || || ||||| | || || ||||||| Sbjct 12853 CGACAAACATCTCCAAAAATTCAGAACCAGAGACAGTTATGAAAGGAACGTTGGCTTCGC 12794 Query 289181 CTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTC 289240 | ||| || | || |||||||| |||||||| ||||| ||||| || || | | Sbjct 12793 CGGCTGTGGCTTTAGCGAGAAGTGTTTTACCTGTACCAGGAGGTCCTGTTAGTAATGCAC 12734 Query 289241 CCTTTGGTACTTTTGCCCCAGCAGACT-TATATTTCTCAGGGCTCTTTAA-AAATTCTAC 289298 | || |||| ||| || || || || |||| | || ||| | ||||| ||| | || Sbjct 12733 CTTTGGGTATTTTAGCTCC-TAAGTCTATATACTGCT-GGGGATTTTTAAGAAAATTAAC 12676 Query 289299 AATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 || |||| || ||| ||||||||| |||||||| |||||||| Sbjct 12675 AAATTCCATAATCTCAATTTTTGCCTCTTCACATCCAGCTACATC 12631 >seq10 Length=3673010 Score = 127 bits (140), Expect = 6e-24 Identities = 223/325 (69%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| | ||||| ||||||| ||| || ||||| ||||||||||| ||||| Sbjct 2023944 ATCATAATGCACCATAACAGATTCCATAGCCTTTATCAAACGCCGCTGAATATACCCAGT 2024003 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | ||||| ||||||||||| || ||||| ||||||| |||||||| ||||| | Sbjct 2024004 CTCGGCAGTTTTGACAGCTGTATCGATAAGACCTTCACGACCTCCCATAGCGTGGAAATA 2024063 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| ||| || || | | | ||| |||| |||||||| | | || || Sbjct 2024064 AAACTCAGATGGTGTTAAACCGGCCAGGTAAGAGTTCTCTACGAAACCTCTTGATTCCGG 2024123 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 || ||| ||| |||| || |||| || || || |||| | || ||||| Sbjct 2024124 ACCATAATCGTCTTTGATAAAATGCGGCAATGTTCTCTTACGGAAGCCAAACGGAATACG 2024183 Query 302793 CTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACT 302852 |||||| || ||||| ||||| |||| ||| | ||| | || |||||||| | | Sbjct 2024184 CTTTCCTTCGACGTTTTGCTGACCCACGCAAGCAATGACTTGTGAAATATTGATGTTTGA 2024243 Query 302853 GCCCTTGGAGCCAGCATTTACCATA 302877 || ||||| ||||| ||||||| Sbjct 2024244 TCCTTTGGAACCAGCGACTACCATA 2024268 >seq219 Length=603346 Score = 113 bits (124), Expect = 1e-19 Identities = 440/679 (65%), Gaps = 22/679 (3%) Strand=Plus/Plus Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATT---TGTAACCAATACCTTGGTTACG 155531 || ||||| || ||||||||||| || || | ||| ||||| || | || ||||| Sbjct 377937 GGATAAAAGTTGACATCAATAATTTTGTTCAGATTTTGTGTAA-CAGT--TTTAGTTACT 377993 Query 155532 TCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATA 155591 ||| | ||| | || ||| |||| | ||| ||||||||| ||| | || Sbjct 377994 TCTTTCAGTTTTTTGAAATCGAATTTTTTGTTTTCA---ACAAACATATTTAGAGCTATT 378050 Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAATCTCACAGC 155649 || || ||||| || || ||| ||| | || || || ||||| ||||| ||| | Sbjct 378051 GAGGCGAGATTGCACACGGCAACCTCATCTTC--CGATGTATATTCAACAATTTCAGTAC 378108 Query 155650 ACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCAT 155709 ||| ||| | ||||| || || | ||| || || ||| ||| |||||||| |||| Sbjct 378109 ACAAATTACTGCATTTGATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCAT 378168 Query 155710 CCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT--CTTTAGCCA 155767 | ||||| || |||||||| || || || || | || || || | ||| |||| ||| Sbjct 378169 CTTTGTACAGCATGTATGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCTTT--CCA 378226 Query 155768 GAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAG 155827 | | || | |||| || ||||| ||| ||||||||| ||||| Sbjct 378227 TAATATCTGAGCGCGTACTTGCCTGACAAATCTGTTTTCTTGTTCATATTTCTCATACAA 378286 Query 155828 CGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAG 155887 || | | || ||||||||||||||| || || || || |||| ||| || | ||| Sbjct 378287 CGCTTCAAATTCTTCACCGTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAG 378346 Query 155888 CGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATA 155947 |||| ||| ||| | || | || ||| || | ||| ||| | |||||| Sbjct 378347 ACTCCAATTTTCATTTCTCTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATA 378406 Query 155948 GAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAAGAATT 156006 || | || || ||| | || || | || ||| |||||| || || || || | Sbjct 378407 AAACAATTCTCTGGCCCTCACTTCTTCCTTTCCTGTG-TTCTTCTTTAAATCCAAAAACT 378465 Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC-AAAACTACC--ATTCCTCTTGC 156063 | ||||||| ||| ||||||| ||| || || || || || | | |||| Sbjct 378466 CGAAGATATCAGAATGCCACGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGC 378525 Query 156064 CACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123 | || ||||| ||||| | || || ||||| | || | | ||| |||| | |||| Sbjct 378526 CCCCTTGATCAACATATCTTGCTGTGTTATTATACACCCTCAACATCGGAACGAGTCCAT 378585 Query 156124 TGGAAGTGCCATTGGTTCC 156142 | ||| | ||||| || || Sbjct 378586 TTGAAATACCATTTGTACC 378604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471715862908115