Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-19 >seq1 Length=6243310 Score = 114 bits (126), Expect = 2e-19 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| | ||| | ||||| ||||| | ||| | || | Sbjct 5821203 GCTTGGCCAACTCGCCGGGCAGCAACAGTCTCACGGACGTCTGAACCTCCCTCGATGTAA 5821144 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| ||||||| ||||| || |||| | ||||||| |||| | Sbjct 5821143 TGGTGGATCTCTTGTTGTAGTGCGCGAGACGTGATGCTTCGGCGGCGATGCGTTCGAATA 5821084 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||| || || |||||||||| ||||| | ||| | ||||| || |||||| | Sbjct 5821083 TATCGTTCACGAAGGAGTTCATGATAGACATGGCCTTACTTGAGATACCGGTGTCGGGAT 5821024 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| || || ||||||||| Sbjct 5821023 GCACCTGCTTCAGAACTTTGTAGATG 5820998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106696461035215