Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq445 221 1e-52 seq232 196 4e-45 seq10 120 3e-22 seq131 105 6e-18 >seq445 Length=79264 Score = 221 bits (244), Expect = 1e-52 Identities = 643/974 (66%), Gaps = 21/974 (2%) Strand=Plus/Minus Query 28809 GCGTATTTTGTGGAATGGAGCGTGTACGGCCGCAACTTTTCGGTGGACAAGGTGCCGCTG 28868 || || || || |||||| | || ||| | | || || | || || |||||| | Sbjct 27713 GCTTACTTCGTTGAATGGGGTGTATACCCCAGGAAATTCCCCGTCGATCGTGTGCCGATT 27654 Query 28869 CCCAACCTCTCGCATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAAC 28928 || || ||| | ||||| | ||||| ||| |||| || || || || || || | || Sbjct 27653 CCAAATCTCACACATCTTCTTTACGGTTTCATACCGATATGTGGGGGTGATGGCATTAAT 27594 Query 28929 GACGCCCTTAAAACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGT 28988 ||| | ||| || || |||||| |||| || || ||||| |||| || || Sbjct 27593 GACAGTTTAAAAGAAATCGAGGGAAGTTTTCAAGCACTACAGCGTTCATGCAGTGGTCGG 27534 Query 28989 TCAGATTTTAAAGTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGC 29048 ||||||||| ||| | || || ||||||||||| || |||| ||||| |||| || Sbjct 27533 GAAGATTTTAAGGTTTCCATCCATGATCCTTGGGCTGCTTTACAGAAACCTCAAAGAGGT 27474 Query 29049 GTGTCTGCGTGGAACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATGGCTGCCAAGTTG 29108 | || | ||||| || || || ||||||||||| ||||| | ||| | || Sbjct 27473 CTATCCTCCTGGAATGAACCTTATAAAGGCAATTTTGGTCAATTGATGTCATTGAAACAA 27414 Query 29109 GCCAATCCACACATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGACCCTTTT 29168 || || ||| || | || ||| |||| || || || || ||||| || | || ||||| Sbjct 27413 GCTAAACCAGACTTGAAGATTTTACCATCAATTGGTGGGTGGACTTTAGCTGATCCTTTC 27354 Query 29169 TATTTTATGCAC-GACGCGGAGAAACGGC-GCGTGTTTGTGGACTCGGTCGAGGAATT-- 29224 | | || | ||| || | || || | ||| ||||| || || || | || || Sbjct 27353 T-TCTTCTTCACTGATAAGAGTAAGCGACAGCG-ATTTGTAGAATCTGTTAAAGATTTCC 27296 Query 29225 TTTGCAGGTGTGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCGGTAA 29284 ||| | |||||||| |||||||| || || ||||||||||| || || || ||||| Sbjct 27295 TTTTAA--CCTGGAAATTCTTTGACGGTGTTGATATTGACTGGGAGTTCCCTGGTGGTAA 27238 Query 29285 AGGCGCTAACCC-GACACTTGGCAACGGGGAGCGCGACGCCG-ACACGTATAACATTTTA 29342 ||| |||||||| ||| || || | | || | || | |||| | ||| Sbjct 27237 AGGTGCTAACCCAGAC-CTCGGAAGCCCAGAAGATGGTGCTGTTTACGT----TAGTTTG 27183 Query 29343 CTGAAGGAATTGCGCGCAATGCTGGATAAACTGCAATTGCAA--ACGGGTAAAACGTATG 29400 || | ||||| || | |||||| ||| | | | ||| | || ||||||||||| | Sbjct 27182 ATGGAAGAATTACGTGAAATGCTTGATGA--TTTATCTGCTACCACTGGTAAAACGTACG 27125 Query 29401 AATTGACAAGCGCAATCAGCTCTGGCCACGACAAAATTGCTGTAGTGAAATACGACGTTG 29460 || |||| |||||||| |||| ||||||||| || || | |||| | Sbjct 27124 AACTGACCTCAGCAATCAGTGCTGGATGGGACAAAATTCAGGTTGTCGATTACGCAAAAG 27065 Query 29461 TGCAAAAATTTCTTGATAAAATATTTCTAATGAGTTACGATTTTAAAGGCGCATGGTCAA 29520 |||| ||| | || | || || | |||||||||||||| ||||| |||||||||| Sbjct 27064 CGCAACAATACATGGACCACATTTTCGTTATGAGTTACGATTTCAAAGGAGCATGGTCAA 27005 Query 29521 ACACCGATTTGGGATATCAAACTACACTCTACGCACCGAGTTGGAATCCCAACGAGCTTT 29580 | ||||||| |||||||| | | || |||||| |||||||| || ||| || Sbjct 27004 ATGATACTTTGGGACATCAAACTCCGTTGTATGCACCGGCATGGAATCCTAAAGAGACTT 26945 Query 29581 ACAACACTGACCACGCCGTAAAGTCGCTCACTAAC-CAAGGCGTGGACCCGCGCAAAATT 29639 ||| || ||| || || || | | || | ||||| ||| ||| || || Sbjct 26944 ACACAACCGACTTCGGTGTGAAAT-ATTTGTTAGCTCAAGGTGTGTCACCGAAAAAGATC 26886 Query 29640 ATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACGGGCGTGACCGGTTACGTCGGTGAC 29699 | || || || || ||||| || || || ||||| || || | ||||||| || | Sbjct 26885 GTAGTTGGTGTTGCTATGTATGGTCGAGGATGGACTGGGGTTAATGGTTACGAGGGAAAT 26826 Query 29700 AACTATTTTAAAGGCACAGCTGCCGGGCCCGTGACCGGCACTTGGGATGACGGAGTTGTC 29759 || || | ||||| ||| | || || || | || || ||| | ||||| ||| | Sbjct 26825 AATCCATTCACAGGCAATGCTACTGGACCAGTCAAAGGAACATGGCAAGACGGTGTTATT 26766 Query 29760 GACTATCGTCAAAT 29773 || ||| | |||| Sbjct 26765 GATTATAGAGAAAT 26752 >seq232 Length=741139 Score = 196 bits (216), Expect = 4e-45 Identities = 153/180 (85%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 ||||| | || ||||||||||| | |||||||||||||||||||| |||||||||||| Sbjct 27835 GCCGGTCTGCCGAGCGCCTTGGCCACCTCGGGCATGTTGACGATGACCGTCTTGATGCCG 27894 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || ||||| || |||||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct 27895 TTCCCCTTCCCCTCGACCTTGGCGCAGATGCGCGGCATCTTGTACCGGTAGAAGGCGTCC 27954 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTTACTTATAACTAACTA 34671 || || |||||||| |||||||| | |||||| | |||| ||| |||||| |||||| Sbjct 27955 GCGACGTTGCGGTTCACGTTCACCGACCCCATTAT-GCTGCGCTTATTTATAA-TAACTA 28012 Score = 161 bits (178), Expect = 8e-35 Identities = 136/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 || |||||||| || || ||||||||||| ||||| || ||||| || |||||||| Sbjct 27252 GCGGGCGGGTTCTTGAGGATGAAGGTGTTCAGCTTGTGGTTGAAGTCCAGGGTGCCGTGG 27311 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 |||||||| || ||||||||||| |||| ||||| || | ||||||||| ||||| Sbjct 27312 TAACCGCACGCCTTGCAGCCCTGGGAGATGGTGTTCCGCTTGGTGGACACGATCAGCTCC 27371 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 ||||| ||||||||||| ||||| |||| ||| |||||||||||||| Sbjct 27372 GTCTCAGGGTTGTCACACTCCGGGCACAGCACGAACTTGCGGATGAA 27418 Score = 136 bits (150), Expect = 3e-27 Identities = 254/363 (70%), Gaps = 29/363 (8%) Strand=Plus/Plus Query 33427 TCCTCGGCCTGCTGCAGCCAGTCCAGGAAGGGCTGCGCGCGGCGCCGCACGTCCGCCA-- 33484 || |||||||||||||||||||| | |||||| ||||| || | | |||||| |||| Sbjct 24629 TCGTCGGCCTGCTGCAGCCAGTCAATGAAGGGTTGCGCACGCCTCACCACGTCGGCCACG 24688 Query 33485 -TCTCCTCGCGGCTTAGCG-CTTTGCGGGACGGCTTGTAAAACCACTCCACGATCGCTTT 33542 ||||| |||||| ||| ||| ||| ||||| |||||||| || | || Sbjct 24689 GTCTCC-CGCGGC---GCGTATTTCTTGGAGGGCTTCGCGGCCCACTCCAGTATGGTCTT 24744 Query 33543 CTTTTCCACCACGTTCAAGTCGTACAGCAGCTTGAACGCGCCGGCCACTTTGGGCAGCAG 33602 || || ||||||| || ||||||||||||||| | | || ||| ||| ||||||| Sbjct 24745 CTCCTCGACCACGTCCAGGTCGTACAGCAGCTTCAGCACGGCGGGCACCCGCTGCAGCAG 24804 Query 33603 CGC----CTGGT-----CCAAAACGCAcagcgcggtgagcgcggcccgctgcgc----gc 33649 || ||||| ||| || |||||| |||||| |||| | | || || Sbjct 24805 GGCGGGGCTGGTGTGGGCCAGGGCGGTGAGCGCGTGGAGCGCCGCCCTCGGAGCCTTGGC 24864 Query 33650 gcagatcgccgcgcgtaaactgcagcagcagcgcgcggtacttgcgcACGTCCCCGGCGA 33709 | ||| |||||| | | | ||||||| ||||| ||| ||||||| | || | Sbjct 24865 G----TCGGCGCGCGCCAGGCGTATCAGCAGCATGCGGTGCTTCTTCACGTCCGCCGCCA 24920 Query 33710 ACGCCGCCGGC-CTCACCAGCACCTCGAACAGC-ACCAGCGGCGCCTTCGACTTCACCTC 33767 || | ||| | ||||||||||||||| ||| |||||| |||||||||||||| || Sbjct 24921 GCG-TGTTGGCGCCCACCAGCACCTCGAA-AGCGACCAGCAATGCCTTCGACTTCACGTC 24978 Query 33768 CAG 33770 ||| Sbjct 24979 CAG 24981 Score = 120 bits (132), Expect = 3e-22 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || ||||| ||||||| ||| ||||||||||| |||||| || ||||| || ||| Sbjct 27503 CCGTCCAGCAGATCCTGTAGCTTGGCGGAGTCGTGGCTGCCGTTCACTATGAAGCGCTCG 27562 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 |||||| | |||| ||| || || |||||||||||||| ||||||||||| ||||| Sbjct 27563 TTTTTGAAGTCGAACTGAGTCTGGGCGCCCAGCTCGCAGCCGAAGTACTTGGTCGG 27618 >seq10 Length=3673010 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 103700 TGGCCGCGCGGTTTGAAGCAACATCCCGAGATACTTGCCGAAGCTGGTTTCTTTTACACC 103759 |||||||| || || || | ||||| || |||||||| || |||||||||||| Sbjct 115741 TGGCCGCGGAGTATGCGCCAGAAGCCCGAAGAGCTGGCCGAAGCCGGATTCTTTTACACC 115682 Query 103760 GGCAAAAGCGACAAAGTCAAATGCTTTTACTGCAACGGCGGTCTGAACAATTGGGAGCAA 103819 ||| | | || ||| |||||||||| |||| |||||||||| || | |||||| | Sbjct 115681 GGCCAGGGTGATAAAACTAAATGCTTTTTCTGCGACGGCGGTCTCAAGGACTGGGAGAAT 115622 Query 103820 GATGACGACCCGTGGCAACAACACGCGCTTTGGTTCGGACGCTGCGCATACGTGCTACTT 103879 || |||| ||| ||| |||| ||||| | ||||||| | | ||||| ||||| | || Sbjct 115621 GACGACGTCCCCTGGGAACAGCACGCTCGTTGGTTCAGTAGGTGCGCTTACGTTCAGCTC 115562 Query 103880 GTCAAAGGC 103888 ||||| ||| Sbjct 115561 GTCAAGGGC 115553 >seq131 Length=856804 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || ||||| || || | ||| || || | Sbjct 308111 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308052 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| ||||| ||||| ||||| | ||| || || Sbjct 308051 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 307992 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||| || || ||| | || |||| | || || | ||||| ||| Sbjct 307991 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTATAAC 307932 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 |||||||| ||||| || ||||| | || ||||| ||||||||||| Sbjct 307931 ATTCAAAAGGAATCAACCCTGCACTTAGTACTAAGATTGCGAGGGGGA 307884 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || ||||| || || | ||| || || | Sbjct 308339 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308280 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| ||||| ||||| ||||| | ||| || || Sbjct 308279 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308220 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||| || || ||| | || |||| | || || | ||||||||| Sbjct 308219 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308160 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || ||||| |||| ||||| || |||| || Sbjct 308159 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308113 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || ||||| || || | ||| || || | Sbjct 308567 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308508 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| ||||| ||||| ||||| | ||| || || Sbjct 308507 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308448 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||| || || ||| | || |||| | || || | ||||||||| Sbjct 308447 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308388 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || ||||| |||| ||||| || |||| || Sbjct 308387 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308341 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || ||||| || || | ||| || || | Sbjct 308795 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308736 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| ||||| ||||| ||||| | ||| || || Sbjct 308735 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308676 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||| || || ||| | || |||| | || || | ||||||||| Sbjct 308675 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308616 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || ||||| |||| ||||| || |||| || Sbjct 308615 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308569 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || ||||| ||||| ||||| |||||||| || || | ||| || || Sbjct 309026 AAGATGCAGATTTTTGTGAAAACCTTAACTGGCAAAACGATCACTTTGGAAGTTGAACCC 308967 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | || ||| || || ||||| ||||| | ||| || Sbjct 308966 TCCGACACGATCGAGAATGTTAAAGCTAAAATCCAGGACAAGGAAGGAATTCCCCCAGAC 308907 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || |||||||| | ||| || || ||| | || |||| | || || | |||||| Sbjct 308906 CAGCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTAC 308847 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||| ||||| || ||||| |||| ||||| || |||| || Sbjct 308846 AACATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412814455019735