Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 131 3e-24 seq12 86.0 1e-10 >seq1 Length=6243310 Score = 131 bits (144), Expect = 3e-24 Identities = 176/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||| ||||| || || |||||||||| |||||| |||||| ||| Sbjct 5821242 TGTACTTAGTGACGGCTTTGGTCCCTTCACTGACGGCGTGCTTGGCCAACTCGCCGGGCA 5821183 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | ||| | ||||| ||||| | ||| | | || ||| | |||||| ||| Sbjct 5821182 GCAACAGTCTCACGGACGTCTGAACCTCCCTCGATGTAATGGTGGATCTCTTGTTGTAGT 5821123 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||| || || || |||| | ||||||| |||| || ||||| || || ||||| Sbjct 5821122 GCGCG--AGACGTGATGCTTCGGCGGCGATGCGTTCGAATATATCGTTCACGAAGGAGTT 5821065 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | || | ||||| || |||||| ||||||||||| || || || Sbjct 5821064 CATGATAGACATGGCCTTACTTGAGATACCGGTGTCGGGATGCACCTGCTTCAGAACTTT 5821005 Query 1485708 GTA 1485710 ||| Sbjct 5821004 GTA 5821002 >seq12 Length=1364364 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 1174808 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 1174867 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 1174868 CTCACCCGGGGCATATC 1174884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915672509243405