Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq10 203 3e-47 seq445 165 6e-36 seq131 93.3 3e-14 seq221 82.4 6e-11 seq64 82.4 6e-11 >seq10 Length=3673010 Score = 203 bits (224), Expect = 3e-47 Identities = 367/533 (69%), Gaps = 19/533 (4%) Strand=Plus/Minus Query 103526 AATTGGCCGGTACAATTCTTGGAACCGCAACGACTGGCCGCCAACGGGTTCTTCTACTTG 103585 || ||||| || | |||| || ||| | | |||||| |||||||||| |||| | Sbjct 116074 AACTGGCCCGTGCCATTCCTGTCGCCGGAGCTACTGGCGCGGAACGGGTTCTACTACCTC 116015 Query 103586 GGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAGATTATGCGCTGGGAGGAG 103645 | |||||||| || | ||||| || ||||| || ||||| ||| ||| || Sbjct 116014 AAGAGAGGCGACGAGGTCAGGTGCGCCTTCTGCAAGGTCGAGATCATGAAGTGGATGGTC 115955 Query 103646 GGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAGTGTCCGTTCCTGaaaaaa 103705 ||||| ||||| || ||||||||| | |||||||||||||| |||||||| | Sbjct 115954 GGCGATGACCCCGCCACGGATCATCAGCGCTGGGCGCCGCAGTGCCCGTTCCTCA----- 115900 Query 103706 aCGGCTGCTGGCGCGCTGCCCGCCGGCCTTGCGAT---GGACGGGCAG---GACGAGTGC 103759 ||| || |||| || ||| | | | || ||||||| | ||||| ||| Sbjct 115899 --GGCGGCAGGCGGCCT--CCGGGAACGTACCCATAGAGGACGGGGGGCGCGACGAATGC 115844 Query 103760 GGCGTGAGCGCGCTGCCGTC--CACCAACGCCTGCGTGCGCATGCCCGGCCCCGCGCACC 103817 ||||| || | |||| | | || ||||| |||| | ||||| || ||| |||| Sbjct 115843 GGCGTTCACGTACCGCCGCCGGCGCCCACGCC--CGTGAGGATGCCGGGTCCCAAACACC 115786 Query 103818 CTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAAGGATTGGCCCCGGAGTCTGA 103877 | | | | | || |||| | | | | ||| || | || ||||| |||||| || Sbjct 115785 CACACTACTCTTCAGAGGACGCCCGCCTGAGAACCTTCAGCGACTGGCCGCGGAGTATGC 115726 Query 103878 AACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTACACCGGCCACAGCGACAACA 103937 ||||| || || || |||||||||||||||||| ||||||||||| | || || | Sbjct 115725 GCCAGAAGCCCGAAGAGCTGGCCGAAGCCGGATTCTTTTACACCGGCCAGGGTGATAAAA 115666 Query 103938 CGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAGCACGATGATGAGCCGTGGC 103997 | |||||||| | ||||||||| ||||| ||||| |||||| | || || | || ||| Sbjct 115665 CTAAATGCTTTTTCTGCGACGGCGGTCTCAAGGACTGGGAGAATGACGACGTCCCCTGGG 115606 Query 103998 AACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTACTTGTCAAGGGC 104050 |||| ||||| | || || | | ||||| ||||| | || ||||||||| Sbjct 115605 AACAGCACGCTCGTTGGTTCAGTAGGTGCGCTTACGTTCAGCTCGTCAAGGGC 115553 >seq445 Length=79264 Score = 165 bits (182), Expect = 6e-36 Identities = 636/986 (65%), Gaps = 21/986 (2%) Strand=Plus/Minus Query 29073 GCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTG 29132 || || || || |||||||| ||||| | | || || || || || |||||| | Sbjct 27713 GCTTACTTCGTTGAATGGGGTGTATACCCCAGGAAATTCCCCGTCGATCGTGTGCCGATT 27654 Query 29133 CCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAAC 29192 || || ||| | ||||| | |||||||||||||| || || || || || || | || Sbjct 27653 CCAAATCTCACACATCTTCTTTACGGTTTCATACCGATATGTGGGGGTGATGGCATTAAT 27594 Query 29193 GACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGT 29252 ||| | ||| || || |||||| | || || || || || |||| || || Sbjct 27593 GACAGTTTAAAAGAAATCGAGGGAAGTTTTCAAGCACTACAGCGTTCATGCAGTGGTCGG 27534 Query 29253 TCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGC 29312 |||||| || || | || || ||||| ||||| || |||| ||||| |||| || Sbjct 27533 GAAGATTTTAAGGTTTCCATCCATGATCCTTGGGCTGCTTTACAGAAACCTCAAAGAGGT 27474 Query 29313 GTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTG 29372 | || | ||||| || || || ||||| || || ||||| | ||| | || | Sbjct 27473 CTATCCTCCTGGAATGAACCTTATAAAGGCAATTTTGGTCAATTGATGTCATTGAAACAA 27414 Query 29373 GCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTC 29432 || || || || | || ||| | || || || || || ||||| || | || || ||| Sbjct 27413 GCTAAACCAGACTTGAAGATTTTACCATCAATTGGTGGGTGGACTTTAGCTGATCCTTTC 27354 Query 29433 TATTTCATGCAC-GACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTTCT 29491 | ||| | ||| || | || || | ||||| || || || | ||| || || Sbjct 27353 TTCTTC-TTCACTGATAAGAGTAAGCGACAGCGATTTGTAGAATCTGTTAAAGATTTCCT 27295 Query 29492 GCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAAGG 29551 ||||| || |||||||| || || || ||||||||||| || ||||| ||||| Sbjct 27294 TTTAACCTGGAAATTCTTTGACGGTGTTGATATTGACTGGGAGTTCCCTGGTGGTAAAGG 27235 Query 29552 CGCCAACCC-GACACTTGGCAACGGGGAGCGCGACGCCG-ACACGTATAACATTTTACTA 29609 || ||||| ||| || || | | || | || | |||| | ||| | Sbjct 27234 TGCTAACCCAGAC-CTCGGAAGCCCAGAAGATGGTGCTGTTTACGT----TAGTTTGATG 27180 Query 29610 AAGGAATTGCGCGCAATGATGGACGAGTTACAATTGCAA--ACGGGCAAAACGTACGAGT 29667 | ||||| || | |||| | || || || | ||| | || || ||||||||||| Sbjct 27179 GAAGAATTACGTGAAATGCTTGATGATTT--ATCTGCTACCACTGGTAAAACGTACGAAC 27122 Query 29668 TGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGC 29727 |||| ||||||||| | ||| ||||| ||| || || | |||| |||| Sbjct 27121 TGACCTCAGCAATCAGTGCTGGATGGGACAAAATTCAGGTTGTCGATTACGCAAAAGCGC 27062 Query 29728 AAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACA 29787 || | | | || | || ||| | ||||| |||||||| ||||| || |||||||| Sbjct 27061 AACAATACATGGACCACATTTTCGTTATGAGTTACGATTTCAAAGGAGCATGGTCAAATG 27002 Query 29788 CCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGA-ACTGTAC 29846 |||||| | |||||| | | || || ||| ||||| || || || ||| ||| Sbjct 27001 ATACTTTGGGACATCAAACTCCGTTGTATGCACCGGCATGGAATCCTAAAGAGACT-TAC 26943 Query 29847 AACACGGACCACGCCGTTA---AGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATT 29903 | || ||| || || | | ||| | | || || ||| ||| || || Sbjct 26942 ACAACCGACTTCGGTGTGAAATATTTGTTAGC---TCAAGGTGTGTCACCGAAAAAGATC 26886 Query 29904 ATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGAC 29963 | || || || || ||||| || || || ||||| || || ||||| || || | Sbjct 26885 GTAGTTGGTGTTGCTATGTATGGTCGAGGATGGACTGGGGTTAATGGTTACGAGGGAAAT 26826 Query 29964 AACTATTTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGTTGTC 30023 || || || |||| ||| |||| || || | || || ||| ||||||| ||| | Sbjct 26825 AATCCATTCACAGGCAATGCTACTGGACCAGTCAAAGGAACATGGCAAGACGGTGTTATT 26766 Query 30024 GACTATCGCCAAATTGAAAACGAAAT 30049 || ||| | |||| | |||||||| Sbjct 26765 GATTATAGAGAAATCGCCAACGAAAT 26740 >seq131 Length=856804 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| ||||| || ||||| || || | ||| || | | Sbjct 308111 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308052 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| ||||| || || ||||| | ||| || ||| Sbjct 308051 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 307992 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 ||||||||||| | ||| || || ||| | || |||||| || || | || || Sbjct 307991 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGC----ACCCTGTCTGATTA 307936 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 |||||||||||||| || || ||||| | || | ||||||||||||||| Sbjct 307935 TAACATTCAAAAGGAATCAACCCTGCACTTAGTACTAAGATTGCGAGGGGGA 307884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| ||||| || ||||| || || | ||| || | | Sbjct 308339 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308280 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| ||||| || || ||||| | ||| || ||| Sbjct 308279 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308220 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 ||||||||||| | ||| || || ||| | || |||||| || || | || || Sbjct 308219 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGC----ACCCTGTCTGATTA 308164 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||||||| || || ||||| |||| | |||||| |||| || Sbjct 308163 CAACATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308113 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| ||||| || ||||| || || | ||| || | | Sbjct 308567 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308508 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| ||||| || || ||||| | ||| || ||| Sbjct 308507 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308448 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 ||||||||||| | ||| || || ||| | || |||||| || || | || || Sbjct 308447 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGC----ACCCTGTCTGATTA 308392 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||||||| || || ||||| |||| | |||||| |||| || Sbjct 308391 CAACATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308341 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| ||||| || ||||| || || | ||| || | | Sbjct 308795 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308736 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| ||||| || || ||||| | ||| || ||| Sbjct 308735 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308676 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 ||||||||||| | ||| || || ||| | || |||||| || || | || || Sbjct 308675 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGC----ACCCTGTCTGATTA 308620 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||||||| || || ||||| |||| | |||||| |||| || Sbjct 308619 CAACATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308569 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| |||||||| ||||| ||||| |||||||| || || | ||| || | Sbjct 309026 AAGATGCAGATTTTTGTGAAAACCTTAACTGGCAAAACGATCACTTTGGAAGTTGAACCC 308967 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | || ||| || || || || ||||| | ||| || Sbjct 308966 TCCGACACGATCGAGAATGTTAAAGCTAAAATCCAGGACAAGGAAGGAATTCCCCCAGAC 308907 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728 |||||||||||||| | ||| || || ||| | || |||||| || || | || Sbjct 308906 CAGCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGC----ACCCTGTCTGA 308851 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||||||||| || || ||||| |||| | |||||| |||| || Sbjct 308850 TTACAACATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308797 >seq221 Length=486136 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || || ||||||||||| ||| | ||| || | | Sbjct 78570 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTAGAAGTCGAACCCTCC 78511 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | ||||| ||| || || || |||||| | || || || Sbjct 78510 GACACCATAGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATCCCTCCAGACCAA 78451 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| |||||||| |||| | ||| | | ||||||||| Sbjct 78450 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTTCTGACTACAAC 78391 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 || || ||||||||||| ||||| Sbjct 78390 ATCCAGAAGGAGTCTACCTTGCA 78368 >seq64 Length=1946208 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| || || || |||| || |||||||||||| | || ||||| Sbjct 785930 AAAATGCAGATTTTCGTTAAGACCCTAACGGGTAAAACCATTACCCTAGAGGTTGAGGCC 785871 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | ||||| ||||| || || ||||| | || ||| Sbjct 785870 TCTGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGAT 785811 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| || | || | || || ||||| |||| || | || | | |||||| Sbjct 785810 CAGCAGCGATTGATATTCGCTGGAAAACAATTGGAAGATGGTCGTACCTTATCCGACTAC 785751 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || ||||||||||| ||||| ||||| | ||||||||| | |||| || Sbjct 785750 AATATTCAAAAGGAATCTACCTTGCATCTTGTGTTGAGACTTAGAGGAGG 785701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398850573227155