Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq131 114 2e-20 seq221 102 1e-16 >seq131 Length=856804 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| |||||||| || ||| | || || |||| || Sbjct 308110 TGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCG 308051 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||| || || || ||||| ||||| || || || | Sbjct 308050 ACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGC 307991 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || || || ||||| ||| | || | | |||||||| | Sbjct 307990 AGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTATAACA 307931 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || | || |||||| || |||| |||| || Sbjct 307930 TTCAAAAGGAATCAACCCTGCACTTAGTACTAAGATTGCGAGGGGG 307885 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| |||||||| || ||| | || || |||| || Sbjct 308338 TGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCG 308279 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||| || || || ||||| ||||| || || || | Sbjct 308278 ACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGC 308219 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || || || ||||| ||| | || | | ||||| || | Sbjct 308218 AGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACA 308159 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || | || || ||| || |||| |||||||| Sbjct 308158 TTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308113 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| |||||||| || ||| | || || |||| || Sbjct 308566 TGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCG 308507 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||| || || || ||||| ||||| || || || | Sbjct 308506 ACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGC 308447 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || || || ||||| ||| | || | | ||||| || | Sbjct 308446 AGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACA 308387 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || | || || ||| || |||| |||||||| Sbjct 308386 TTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308341 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| |||||||| || ||| | || || |||| || Sbjct 308794 TGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCG 308735 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||| || || || ||||| ||||| || || || | Sbjct 308734 ACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGC 308675 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || || || ||||| ||| | || | | ||||| || | Sbjct 308674 AGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACA 308615 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || | || || ||| || |||| |||||||| Sbjct 308614 TTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308569 >seq221 Length=486136 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || ||||| || || | || ||||| | | | Sbjct 79253 TGCAGATCTTTGTTAAAACCCTTACGGGTAAAACTATAACGTTAGAGGTAGAGCCTTCTG 79194 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||| || || |||||| ||| || |||||||| || || ||||||| Sbjct 79193 ATACTATTGAAAACGTGAAGGCTAAAATCCAAGACAAGGAAGGCATCCCCCCAGATCAAC 79134 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || |||||||||||||| ||| | | || | | || || || | Sbjct 79133 AACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTACAACA 79074 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || || ||||| || ||||| | ||| |||| Sbjct 79073 TCCAGAAGGAATCTACACTCCATCTCGTACTACG 79040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786113382903400