Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq445 190 2e-43 seq219 150 2e-31 seq221 125 7e-24 seq131 98.7 1e-15 >seq445 Length=79264 Score = 190 bits (210), Expect = 2e-43 Identities = 634/972 (65%), Gaps = 32/972 (3%) Strand=Plus/Plus Query 18555 TAATCGACCACACCGTTTTCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCGAAT 18614 ||||| | ||||||| || ||| || || ||| || || || || |||| | |||| Sbjct 26761 TAATCAATAACACCGTCTTGCCATGTTCCTTTGACTGGTCCAGTAGCATTGCCTGTGAAT 26820 Query 18615 GGATTATCACTATCG---CTCTTTACCCCAGTCCAACCGCGCCCGTACATTGCTACACCC 18671 ||||||| | ||| | || ||||||||||| || || || ||||| || ||||| Sbjct 26821 GGATTATTTCCCTCGTAACCATTAACCCCAGTCCATCCTCGACCATACATAGCAACACCA 26880 Query 18672 AGTGCAATTTTGCTTGTCGGT---ACGTGTTGCGCAAGCAACGCCTCTACGGCACGATCC 18728 | | | || || | ||||| || ||| || | ||| | || | || Sbjct 26881 ACTACGATCTT---TTTCGGTGACACACCTTGAGCTAACAAATATTTCACACCGAAGTCG 26937 Query 18729 GCGCAATAAGGTTCGTCGGGTTTCCATGCAGGTGCAAACAAAGCGGTTTGATGTCCTAAA 18788 | |||| || | || |||||||| |||||| |||| | ||||||||||| ||| Sbjct 26938 GTTGTGTAAGTCTCTTTAGGATTCCATGCCGGTGCATACAACGGAGTTTGATGTCCCAAA 26997 Query 18789 TCCGTCATA-GACCAGGCTCCTTTAAAATCGTACGACATTAAAAATATGGTGTCGAGGTA 18847 |||| ||||| |||||||| |||||||| ||| | || ||| ||| | ||| Sbjct 26998 GTA-TCATTTGACCATGCTCCTTTGAAATCGTAACTCATAACGAAAATGTGGTCCATGTA 27056 Query 18848 TTTTTGCGCTTCAGTGTAATCGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCACT 18907 || |||||||| | ||||||||| || ||| || || || || || || || Sbjct 27057 TTGTTGCGCTTTTGCGTAATCGACAACCTGAATTTTGTCCCATCCAGCACTGATTGCTGA 27116 Query 18908 CGTCAACATATAGTAACGATT-----GTGATGTA-CGCCTAGGGCGTCGAGCATGCCGCG 18961 |||| | ||| || || ||| ||| | || | || ||||| | || Sbjct 27117 GGTCAGT---TCGTA-CGTTTTACCAGTG--GTAGCAGATAAATCATCAAGCATTTCACG 27170 Query 18962 AAGTTCACGCAGCAGGATCGTGTACGTGGCCCGATCGCGTTCGGCGTCGCCGACGTTGGG 19021 | ||| || || | ||| || | ||| ||| | | |||| || || Sbjct 27171 TAATTCTTCCATCAAACTAACGTAAACAGCACCATC---TTCTGGGCTTCCGAGGTCTGG 27227 Query 19022 GTTAGCGCCATTGCCGCCTGGAAACTCCCAATCAATATCGACGCCATCGAAGAATTTCCA 19081 |||||| || || || || || |||||||| |||||||| || || || ||||||||||| Sbjct 27228 GTTAGCACCTTTACCACCAGGGAACTCCCAGTCAATATCAACACCGTCAAAGAATTTCCA 27287 Query 19082 CGTTTCTAGATACTCTTGGACTGAATCGATAAACGTCTGCCG--TACGATCTTGTC-GTG 19138 ||| || | |||| || || || | ||| ||| || ||| |||| || ||| Sbjct 27288 GGTTAAAAGGAAATCTTTAACAGATTCTACAAATCGCTGTCGCTTAC--TCTTATCAGTG 27345 Query 19139 CATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATG 19198 | | | ||| || || | | ||||| || || || || |||| | || | | Sbjct 27346 AAGAAGAAGAAA-GGATCAGCTAAAGTCCACCCACCAATTGATGGTAAAATCTTCAAGTC 27404 Query 19199 AGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 19258 || || || ||| || ||| | ||| ||||| |||||||| || ||||| ||||| Sbjct 27405 TGGTTTAGCTTGTTTCAATGACATCAATTGACCAAAATTGCCTTTATAAGGTTCATTCCA 27464 Query 19259 TGCGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACTTT 19318 | | | |||| |||| |||||||||| || ||||||||||| || |||| || || Sbjct 27465 GGAGGATAGACCTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGATCATGGATGGAAACCTT 27524 Query 19319 GAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTTTT 19378 || || | ||||| || ||||| || | |||| ||||| ||| || ||| Sbjct 27525 AAAATCTTCCCGACCACTGCATGAACGCTGTAGTGCTTGAAAACTTCCCTCGATTTCTTT 27584 Query 19379 GAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGCGA 19438 | ||||| ||||| || || || || || || | ||||||||| | | ||| | Sbjct 27585 TAAACTGTCATTAATGCCATCACCCCCACATATCGGTATGAAACCGTAAAGAAGATGTGT 27644 Query 19439 CAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCGAC 19498 | || || | ||||| ||||||||| || | | || || ||||||||||| || Sbjct 27645 GAGATTTGGAATCGGCACACGATCGACGGGGAATTTCCTGGGGTATACACCCCATTCAAC 27704 Query 19499 AAAGTATGCACC 19510 ||||| || || Sbjct 27705 GAAGTAAGCTCC 27716 >seq219 Length=603346 Score = 150 bits (166), Expect = 2e-31 Identities = 480/739 (65%), Gaps = 4/739 (1%) Strand=Plus/Plus Query 150720 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTAC-TGTGAAAC 150778 ||||||| |||||||| || || |||||||| ||||| | | || ||| ||| Sbjct 377482 GGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATGTTTGATGTAAAA- 377540 Query 150779 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 150838 |||||||| || || || || |||||||| ||||| | ||| || ||||| ||| Sbjct 377541 GGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTGGGCATTGGCGCT 377600 Query 150839 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 150898 | || | |||||||| | || | ||| || ||| ||| | | ||| ||| Sbjct 377601 AATAGAAGGGAATTACGAAGACCATGCTTTGCAATTTTTTCTTTAAGAGCAGCCCAATCC 377660 Query 150899 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 150958 || | || ||| | ||||||| |||||| || | || |||| ||| || Sbjct 377661 CAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCCCTTGGCTAGCAGGA 377720 Query 150959 CTACCGGCAAACGTGCTATAAGGCTCA-CTAACAGATGCCAGTTCGTAACTGGCCTCGAG 151017 || || | | ||||| ||| || || | || | || |||| |||||||| Sbjct 377721 CTTCCCTCGTAAGTGCTGTAAACACCATCTCTCTCG-GCTAACTCACAACTTGCCTCGAG 377779 Query 151018 CGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCAC 151077 |||| | | ||| | |||||| ||||| | ||| | || | || || ||| | Sbjct 377780 CGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATTGCCTTCTCACTCTC 377839 Query 151078 GTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGG 151137 ||||||| | || | |||||||||||| || || || |||| ||| || || ||||| Sbjct 377840 ATACGGTAATCTCATAAGAACAAATGCATCCGCTAATCCCTGAACGCCGATACCAATGGG 377899 Query 151138 ACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAAT 151197 | || |||||| || ||||| || | ||| || || ||| ||||||||| Sbjct 377900 CCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATAAAAGTTGACATCAATAAT 377959 Query 151198 TTTATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGT 151257 ||| |||| | | | ||| ||| || | || | || ||||| || | Sbjct 377960 TTTGTTCAGATTTTGTGTAACAGTTTTAGTTACTTCTTTCAGTTTTTTGAAATCGAATTT 378019 Query 151258 ATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTC 151317 | || | | | | |||| | || || || || ||||| || |||||| || || Sbjct 378020 TTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGATTGCACACGGCAACCTCATC 378079 Query 151318 GGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATT 151377 || ||||| || ||||| | ||||||||| |||||||| || ||| ||| Sbjct 378080 TTCCGATGTATATTCAACAATTTCAGTACACAAATTACTGCATTTGATAGTTCCAAGATT 378139 Query 151378 ACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 151437 ||||||| ||||| | ||| || || || ||||| | |||||| || || || ||||| Sbjct 378140 TTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCATGTATGGAGTACCAGTTTC 378199 Query 151438 GGCTTGAATTTCTATAATG 151456 | |||| ||| |||||| Sbjct 378200 GACTTGCGCTTCAATAATG 378218 >seq221 Length=486136 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||||||||| | ||||| ||||| |||||||| |||||||||||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| || | |||||| || ||| |||||| ||||||||||| || || Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| |||||| ||| | | ||| | || || | ||||| ||| Sbjct 79376 ATTCCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACT 79435 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || || | |||||||| || || ||||| Sbjct 79436 TCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCAT 79482 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || || || | || | ||| | ||| ||||| || || |||||||| || Sbjct 78572 CCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAA 78631 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | |||||| || || ||||||||| |||||||||| || || |||||||| Sbjct 78632 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGG 78691 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| ||||| | || | ||||||| ||||| ||| Sbjct 78692 ATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACT 78751 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | || ||||| ||||| || || ||||| || |||||| Sbjct 78752 TCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 78799 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || || || | || | ||| | ||| ||||| || || |||||||| || Sbjct 78800 CCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAA 78859 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | |||||| || || ||||||||| |||||||||| || || |||||||| Sbjct 78860 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGG 78919 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| ||||| | || | ||||||| ||||| ||| Sbjct 78920 ATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACT 78979 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | || ||||| ||||| || || ||||| || |||||| Sbjct 78980 TCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 79027 >seq131 Length=856804 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| || | | ||||| || | || ||||| ||||| ||||| ||||| | Sbjct 307885 CCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGAC 307944 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | ||||| | || || || ||| |||| || | ||||| || || || Sbjct 307945 AGGGTGCGTCCA-TCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGG 308003 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| || || ||| | | || | |||||| | |||||| || Sbjct 308004 AATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308063 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | ||| || || || ||||||||||| || |||||||| Sbjct 308064 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || ||||| ||||| ||||||||||| || |||| || | ||||| | || || || Sbjct 308143 GTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA-TCTTCTAACTGCTTGCC 308201 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 ||| |||| || | ||||| || || || || ||||| ||||| || || ||| Sbjct 308202 GGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTT 308261 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | |||||| | |||||| ||||| | ||| | ||| || || || ||||| Sbjct 308262 AACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGT 308321 Query 137394 TTTTACGAATATTTGCAT 137411 |||||| || |||||||| Sbjct 308322 TTTTACAAAGATTTGCAT 308339 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || ||||| ||||| ||||||||||| || |||| || | ||||| | || || || Sbjct 308371 GTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA-TCTTCTAACTGCTTGCC 308429 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 ||| |||| || | ||||| || || || || ||||| ||||| || || ||| Sbjct 308430 GGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTT 308489 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | |||||| | |||||| ||||| | ||| | ||| || || || ||||| Sbjct 308490 AACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGT 308549 Query 137394 TTTTACGAATATTTGCAT 137411 |||||| || |||||||| Sbjct 308550 TTTTACAAAGATTTGCAT 308567 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || ||||| ||||| ||||||||||| || |||| || | ||||| | || || || Sbjct 308599 GTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA-TCTTCTAACTGCTTGCC 308657 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 ||| |||| || | ||||| || || || || ||||| ||||| || || ||| Sbjct 308658 GGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTT 308717 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | |||||| | |||||| ||||| | ||| | ||| || || || ||||| Sbjct 308718 AACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGT 308777 Query 137394 TTTTACGAATATTTGCAT 137411 |||||| || |||||||| Sbjct 308778 TTTTACAAAGATTTGCAT 308795 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || ||||| ||||| ||||||||||| || |||| || | ||||| | || || || Sbjct 308827 GTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA-TCTTCTAACTGCTTGCC 308885 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 ||| |||| || | ||||| || || || || ||||| ||||| ||||| ||| Sbjct 308886 GGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTAGCTTT 308945 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | |||||| | |||||| ||||| | ||| | ||| ||||| || || || Sbjct 308946 AACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTGCCAGTTAAGGT 309005 Query 137394 TTTTACGAATATTTGCAT 137411 ||| || || || ||||| Sbjct 309006 TTTCACAAAAATCTGCAT 309023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488511053814000