Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq221 203 6e-47 seq131 176 9e-39 seq64 125 1e-23 seq41 109 1e-18 >seq221 Length=486136 Score = 203 bits (224), Expect = 6e-47 Identities = 187/237 (79%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||||| ||| | || |||||||| ||||| || || || ||||| | Sbjct 79254 TACCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGG 79313 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||||| || | ||||||||| |||||||| | || ||| |||||||| | Sbjct 79314 AAAGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTG 79373 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || |||||||| || ||||| ||||||||||| ||||| |||||| | Sbjct 79374 GGATTCCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGA 79433 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 ||||||||||||| ||||| || || | ||| |||||||| ||||||||| | |||| Sbjct 79434 CTTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTTGATAT 79490 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| |||||||| |||| ||||| || ||||| || || || ||||| Sbjct 78344 CCGCCTCTGAGACGGAGAACTAAATGCAAGGTAGACTCCTTCTGGATGTTGTAGTCAGAA 78403 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || ||||||||||| || | ||||| |||||||| Sbjct 78404 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCTGGAGGG 78463 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| || ||||| |||||||| || || || || ||||| ||| Sbjct 78464 ATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCTATGGTGTCGGAGGGTTCGACT 78523 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || ||||| ||||| ||||| || || |||||||| Sbjct 78524 TCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| || || || | || || || ||||| ||||| || || || |||| Sbjct 78798 TACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAG 78857 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||||| || || || ||||||||||| || | ||||| || |||| Sbjct 78858 AAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAG 78917 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || ||||||||||| ||||| || || |||||| | Sbjct 78918 GGATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGA 78977 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || ||||| ||||| ||||| || || |||||||| Sbjct 78978 CTTCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | || || |||||||| ||||| || || || || | Sbjct 79026 TACCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGG 79085 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||||| |||||| ||||| || || | | |||||||||||| | Sbjct 79086 AGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGG 79145 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| || || || || || |||||||| |||||| ||| |||| Sbjct 79146 GGATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCTA 79205 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| || || || || | || || ||||| |||||||| Sbjct 79206 CCTCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| || || || | || || || ||||| ||||| || || || |||| Sbjct 78570 TACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAG 78629 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||||| || || || ||||||||||| || | ||||| || |||| Sbjct 78630 AAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAG 78689 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || ||||||||||| ||||| || || |||||| | Sbjct 78690 GGATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGA 78749 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || || ||||| ||||| ||||| || || |||||||| Sbjct 78750 CTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 >seq131 Length=856804 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||| | || ||||||||||| || ||||| || || || ||||||||||| Sbjct 307885 CCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGAC 307944 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||||| || || || |||||||| ||||| || || ||||| || Sbjct 307945 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308004 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| ||||| ||||| || ||||| || ||||| ||| Sbjct 308005 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308064 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| || || || || || |||||||| || ||||| Sbjct 308065 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | || || |||||||| || ||||| || || || || |||||||| Sbjct 308113 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308172 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||||| || || || |||||||| ||||| || || ||||| || Sbjct 308173 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308232 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| ||||| ||||| || ||||| || ||||| ||| Sbjct 308233 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308292 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| || || || || || |||||||| || ||||| Sbjct 308293 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | || || |||||||| || ||||| || || || || |||||||| Sbjct 308341 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308400 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||||| || || || |||||||| ||||| || || ||||| || Sbjct 308401 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308460 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| ||||| ||||| || ||||| || ||||| ||| Sbjct 308461 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308520 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| || || || || || |||||||| || ||||| Sbjct 308521 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | || || |||||||| || ||||| || || || || |||||||| Sbjct 308569 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308628 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||||| || || || |||||||| ||||| || || ||||| || Sbjct 308629 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308688 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| ||||| ||||| || ||||| || ||||| ||| Sbjct 308689 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308748 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| || || || || || |||||||| || ||||| Sbjct 308749 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | || || |||||||| || ||||| || || || || |||||||| Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||||| || || || |||||||| ||||| || || ||||| || Sbjct 308857 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308916 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || || || ||||| ||||| || ||||| || ||||| ||| Sbjct 308917 ATTCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308976 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| || || || || ||||| |||||||| Sbjct 308977 TCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCAT 309023 >seq64 Length=1946208 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| | | || || | |||| |||||||| || || ||||| || || || Sbjct 785700 ACCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGA 785759 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||| ||||| | |||||||||||| || || | || || |||||||| || Sbjct 785760 TAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGG 785819 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| || |||||||| || || || ||| | || || Sbjct 785820 AATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAAC 785879 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || || || || | ||||| || || ||||||||| Sbjct 785880 CTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATT 785928 >seq41 Length=2363699 Score = 109 bits (120), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 198292 ATATCTATTCTATTAAACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCAT 198351 |||| ||| | || |||| || || || ||||| |||||| || ||||| | Sbjct 735305 ATATATATACACTTGAACAGTTCTGCAAAGCAGAAACCCATGACGACCTGTGGAACTCGG 735364 Query 198352 CGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTA 198411 | |||||||| ||| | | ||| || || |||||| | ||| |||||||||||||| || Sbjct 735365 CTCAAATACAAATGGTTAAAGAGGGGAAGATGCATGGGTTTCTAAGAATGTACTGGTGTA 735424 Query 198412 AAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAA 198471 | ||||| || || ||||| | |||||||| || |||| ||| || ||| | | Sbjct 735425 AGAAGATCCTAGAGTGGACCTCGAGTCCGGAAGAGGCATTGAAATATGCCATATATTTGA 735484 Query 198472 ACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT-TGTA 198522 || || | ||| | ||||||| ||| |||| |||||| || ||| |||| Sbjct 735485 ACGATCATTACAGTGTTGACGGCAGGGACCCTAGCGGATATGTTGGTGTGTA 735536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981759332728905