Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq219 179 9e-40 seq10 111 4e-19 >seq219 Length=603346 Score = 179 bits (198), Expect = 9e-40 Identities = 372/549 (68%), Gaps = 11/549 (2%) Strand=Plus/Minus Query 110613 ATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGT 110672 |||||| |||| ||||| ||| | | |||||| | | || || | || ||| Sbjct 378652 ATTGGTCTTCATATTCATTGTATAAGAGCTAAAGGAACTTACATAGCTGGTACAAATGGT 378593 Query 110673 GCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAAT 110732 ||||| |||||| ||||| ||||| || || | || |||| |||| |||||| || Sbjct 378592 ATTTCAAATGGACTCGTTCCGATGTTGAGGGTGTATAATAACACAGCAAGATATGTTGAT 378533 Query 110733 CAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGAT 110789 ||||| || || | | | || |||| || |||||| | || || |||||||| ||| Sbjct 378532 CAAGGGGGCAATAAACGTCCGGGAGCATTCGCCATCTATGTGGAGCCGTGGCATTCTGAT 378473 Query 110790 ATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGAT 110849 || || || || || || | || || |||| |||||| || || | || Sbjct 378472 ATCTTCGAGTTTTTGGATTTAAAGAAGAACACAGGAAAGGAAGAAGTGAGGGCCAGAGAA 378413 Query 110850 TTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATG 110909 || |||||||| | ||||| ||||||| |||||||| | ||| | ||||| | Sbjct 378412 TTGTTTTATGCTCTATGGATACCAGATTTGTTCATGAAGAGGGTTGAGAGAAATGAAAAT 378353 Query 110910 TGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTT 110969 ||| ||| |||||||| ||| | ||| || || | |||| || || |||| ||| Sbjct 378352 TGGAGTCTGATGTGTCCCCATAACTGTCCAGGGCTTTATGATTGTTACGGTGAAGAATTT 378293 Query 110970 GAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAA 111029 |||| | || || ||||||||| ||||| || ||| || ||| | | ||||| Sbjct 378292 GAAGCGTTGTATGAGAAATATGAACAAGAAAACAGATTTGTCAGGCAAGTACGCGCTCAG 378233 Query 111030 GAACTTTGGTTCAAA---ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTG 111086 | | ||| ||| || ||||| | ||||| |||||||| ||||| || || || Sbjct 378232 ATATTATGG---AAAGCCATTATTGAAGCGCAAGTCGAAACTGGTACTCCATACATGCTG 378176 Query 111087 TATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAG 111145 || |||||| ||| | || | ||| |||||||| ||| | ||||| || || | || Sbjct 378175 TACAAAGATGCATGT-AACAGAAAAAGTAATCAAAAAAATCTTGGAACTATCAAATGCAG 378117 Query 111146 TAATTTGTG 111154 ||||||||| Sbjct 378116 TAATTTGTG 378108 >seq10 Length=3673010 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 || |||| || |||||| |||| | ||||| | |||||| |||| ||||| ||| | Sbjct 2025227 CACTTGAGAGATGATGATTTGGTTATCTTCAACCGACAACCAACACTACATAAGATGAGT 2025168 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| ||||| ||||||||||| | | | |||||||| | || | ||| | Sbjct 2025167 ATGATGGGTCATAGGGTCAAAGTATTGCCATGGTCAACATTTCGTATGAACTTGAGTTGT 2025108 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | |||| || ||||| ||||| || || |||||||||||| | |||||||| || || Sbjct 2025107 ACTTCGCCGTACAATGCTGATTTCGACGGCGATGAAATGAATTTACATGTACCCCAGTC 2025049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186730763419595