Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq221 136 3e-27 seq131 120 2e-22 seq64 89.7 3e-13 >seq221 Length=486136 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || || | ||| ||||| ||||||||| |||||||||||||| || || ||| | Sbjct 79267 ACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCC 79326 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||||||||||||| ||||| ||||| || ||||||||| | || | || ||||| Sbjct 79327 GTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTT 79386 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| |||||| | || ||||| || | || || | ||| || || | || | Sbjct 79387 GTCTTGAATTTT-GGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTA 79445 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | |||||||||||| |||||||| Sbjct 79446 TGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCAT 79482 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| |||| || | ||| || || || || || |||||||| || || Sbjct 78571 ACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGA 78630 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || |||| |||| || || || ||||| |||| |||||| || || | || Sbjct 78631 AAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGG 78690 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | || |||| || | ||||| | ||| | Sbjct 78691 GATACCTTCTTTGTCTTGGATTTTC-GCTTTTACATTCTCAATTGTGTCTGAAGGTTCGA 78749 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || || || || || |||||||||||| Sbjct 78750 CTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 78799 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| |||| || | ||| || || || || || |||||||| || || Sbjct 78799 ACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGA 78858 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || |||| |||| || || || ||||| |||| |||||| || || | || Sbjct 78859 AAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGG 78918 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | || |||| || | ||||| | ||| | Sbjct 78919 GATACCTTCTTTGTCTTGGATTTTC-GCTTTTACATTCTCAATTGTGTCTGAAGGTTCGA 78977 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || || || || || |||||||||||| Sbjct 78978 CTTCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 79027 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||||| || | ||| || || || || || |||||||| ||||| Sbjct 79027 ACCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGA 79086 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || || |||||||| || || ||||||||||| || |||||| | || Sbjct 79087 GAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGGG 79146 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||||| ||| || | || | || || | || | Sbjct 79147 GATGCCTTCCTTGTCTTGGATTTTAGCCTTC-ACGTTTTCAATAGTATCAGAAGGCTCTA 79205 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||| || |||||||| || | ||||| ||||||||||||||| Sbjct 79206 CCTCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCATA 79255 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | || ||||| | || ||| || || |||||||| || || Sbjct 78344 CCGCCTCTGAGACGGAGAACTAAATGCAAGGTAGACTCCTTCTGGATGTTGTAGTCAGAA 78403 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || |||| |||| || || || ||||| |||| |||||| || ||| | || Sbjct 78404 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCTGGAGGG 78463 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| || | |||| || | ||||||| | ||| || Sbjct 78464 ATGCCTTCCTTGTCTTGGATTTT-TGCCTTTACATTCTCTATGGTGTCGGAGGGTTCGAC 78522 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || || || || || |||||||||||| Sbjct 78523 TTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 78571 >seq131 Length=856804 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| | || ||||| || || || || ||||| ||||||||||| || Sbjct 308113 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308172 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || || || || |||||||| || | | |||||| ||| | || Sbjct 308173 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308232 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | || ||||| || | |||||| | ||| || Sbjct 308233 ATTCCTTCCTTGTCCTGGATCTT-AGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308291 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 308292 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| | || ||||| || || || || ||||| ||||||||||| || Sbjct 308341 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308400 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || || || || |||||||| || | | |||||| ||| | || Sbjct 308401 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308460 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | || ||||| || | |||||| | ||| || Sbjct 308461 ATTCCTTCCTTGTCCTGGATCTT-AGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308519 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 308520 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| | || ||||| || || || || ||||| ||||||||||| || Sbjct 308569 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308628 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || || || || |||||||| || | | |||||| ||| | || Sbjct 308629 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308688 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | || ||||| || | |||||| | ||| || Sbjct 308689 ATTCCTTCCTTGTCCTGGATCTT-AGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308747 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 308748 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| | || ||||| || || || || ||||| ||||||||||| || Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || || || || |||||||| || | | |||||| ||| | || Sbjct 308857 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308916 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| | || ||||| || | |||||| | ||| || Sbjct 308917 ATTCCTTCCTTGTCCTGGATTTT-AGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308975 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 308976 TTCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCAT 309023 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| ||| | || || || || || || || ||||| ||||| ||||| || Sbjct 307885 CCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGAC 307944 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || || || || |||||||| || | | |||||| ||| | || Sbjct 307945 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308004 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || ||| ||||| || | |||||| | ||| || Sbjct 308005 ATTCCTTCCTTGTCCTGGATCTTAGCTTT-AACATTCTCGATCGTGTCGGAGGGTTCAAC 308063 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 308064 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 >seq64 Length=1946208 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33520 TCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCG 33579 ||||| ||||| | | ||||| | ||| | || || ||||| || ||||| ||| Sbjct 785698 TCACCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCG 785757 Query 33580 GAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGC 33639 || | || || | || |||||||||||||| || || ||||| |||||||||||| | Sbjct 785758 GATAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGT 785817 Query 33640 GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTC 33698 || | |||||| ||||| || || | | |||| || | |||||| | || Sbjct 785818 GGAATACCTTCCTTGTCTTGGATCTT-GGCCTTTACATTCTCGATGGTGTCAGAGGCCTC 785876 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||| |||| || || || || |||||||| Sbjct 785877 AACCTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCAT 785927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328682387198400