Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq221 145 2e-29 seq131 123 6e-23 seq64 86.0 1e-11 >seq221 Length=486136 Score = 145 bits (160), Expect = 2e-29 Identities = 171/228 (75%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| |||||||| || ||||| || || ||||||||||| ||| Sbjct 79485 AAAATG---CAGATTTTTGTAAAAACGCTTACTGGAAAGACCATAACTTTGGAAGTCGAA 79429 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 ||| || || | ||| || ||||| ||| |||||||| ||||| ||||| || Sbjct 79428 CCTTCGGATACTATTGAAAATGTTAAAGCCAAA-ATTCAAGACAAAGAGGGAATCCCACC 79370 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || ||| || | ||||| || ||||| || ||||| || ||| | ||| | |||| Sbjct 79369 AGATCAGCAACGATTGATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGA 79310 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| | || ||||||||||||||||| ||||||||| | ||||| Sbjct 79309 TTACAACATTCAAAAAGAGTCTACTCTTCATCTTGTTTTGCGTCTTCG 79262 >seq131 Length=856804 Score = 123 bits (136), Expect = 6e-23 Identities = 143/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||||||||||||||||||||| ||| || ||||| |||| Sbjct 308324 AAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCGACACGATCGAGAAT 308265 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || ||||||||| || ||| || ||||||||||| Sbjct 308264 GTTAAAGCTAA-GATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGAGACTTATCTT 308206 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| |||||||| ||||||||| | || || | ||||||||| | || || || || Sbjct 308205 TGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACATTCAAAAGGAATC 308146 Query 206364 TACTCTTCAC 206373 || || ||| Sbjct 308145 AACCCTGCAC 308136 Score = 123 bits (136), Expect = 6e-23 Identities = 143/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||||||||||||||||||||| ||| || ||||| |||| Sbjct 308552 AAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCGACACGATCGAGAAT 308493 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || ||||||||| || ||| || ||||||||||| Sbjct 308492 GTTAAAGCTAA-GATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGAGACTTATCTT 308434 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| |||||||| ||||||||| | || || | ||||||||| | || || || || Sbjct 308433 TGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACATTCAAAAGGAATC 308374 Query 206364 TACTCTTCAC 206373 || || ||| Sbjct 308373 AACCCTGCAC 308364 Score = 123 bits (136), Expect = 6e-23 Identities = 143/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||||||||||||||||||||| ||| || ||||| |||| Sbjct 308780 AAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCGACACGATCGAGAAT 308721 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || ||||||||| || ||| || ||||||||||| Sbjct 308720 GTTAAAGCTAA-GATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGAGACTTATCTT 308662 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| |||||||| ||||||||| | || || | ||||||||| | || || || || Sbjct 308661 TGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACATTCAAAAGGAATC 308602 Query 206364 TACTCTTCAC 206373 || || ||| Sbjct 308601 AACCCTGCAC 308592 Score = 123 bits (136), Expect = 6e-23 Identities = 150/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || |||||||||||||||||||| ||| || ||| Sbjct 309020 CAGATTTTTGTGAAAACCTTAACTGGCAAAACGATCACTTTGGAAGTTGAACCCTCCGAC 308961 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| || || || || ||||||||| || ||| || Sbjct 308960 ACGATCGAGAATGTTAAAGCTAAA-ATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCA 308902 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||||||||||| ||||| |||||||| ||||||||| | || || | ||||||||| | Sbjct 308901 GAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACAT 308842 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 || || || || || || ||| Sbjct 308841 TCAAAAGGAATCAACCCTGCAC 308820 Score = 120 bits (132), Expect = 7e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||||||||||||||||||||| ||| || ||||| |||| Sbjct 308096 AAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCGACACGATCGAGAAT 308037 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || ||||||||| || ||| || ||||||||||| Sbjct 308036 GTTAAAGCTAA-GATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGAGACTTATCTT 307978 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| |||||||| ||||||||| | || || | ||||| ||| | || || || || Sbjct 307977 TGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTATAACATTCAAAAGGAATC 307918 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||| | || | ||| | ||| Sbjct 307917 AACCCTGCACTTAGTACTAAGATTGCGA 307890 >seq64 Length=1946208 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| || || | || || || |||||||| |||| Sbjct 785912 AAGACCCTAACGGGTAAAACCATTACCCTAGAGGTTGAGGCCTCTGACACCATCGAGAAT 785853 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| ||||| || ||||| ||| || || || || | || ||| Sbjct 785852 GTAAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAGCAGCGATTGATATTC 785793 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| || ||||||||||| | || || |||| ||||| | || || || ||| Sbjct 785792 GCTGGAAAACAATTGGAAGATGGTCGTACCTTATCCGACTACAATATTCAAAAGGAATCT 785733 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || | || ||||| ||||||||| || Sbjct 785732 ACCTTGCATCTTGTGTTGAGACTTAGA 785706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181739108483795