Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq445 197 1e-45 seq219 196 5e-45 seq221 104 2e-17 seq131 93.3 4e-14 >seq445 Length=79264 Score = 197 bits (218), Expect = 1e-45 Identities = 401/593 (68%), Gaps = 2/593 (0%) Strand=Plus/Minus Query 24734 TTGCCGACACCGACGGTTCGCATCTTGCCCCGCTAGTATACGACTTTCTCGAAAATAACA 24793 |||| ||||||||||| |||||| | ||| ||| ||| | ||||| |||| Sbjct 27808 TTGCTGACACCGACGGAAGTCATCTTCCACCGTTAGAATATTCAATGGGAGAAAAGAACA 27749 Query 24794 AGCGTTTCGAG-AAACATCCCGATAAAATTGTAGCGGCTTACTTCGTCGAGTGGGGCGTG 24852 | | ||| | |||| || | |||| | || | ||||||||||| || ||||| || Sbjct 27748 AACCATTCAAACAAACGTCTGG-TAAAGTCGTTGGAGCTTACTTCGTTGAATGGGGTGTA 27690 Query 24853 TATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCGCCCAATTTGTCGCACTTGCTATAC 24912 || | || | || ||||||| ||||| || ||| | | || | || ||| Sbjct 27689 TACCCCAGGAAATTCCCCGTCGATCGTGTGCCGATTCCAAATCTCACACATCTTCTTTAC 27630 Query 24913 GCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAACGACGCTCTCAAAACAGTTCCCGGT 24972 | |||| | |||||||| || || || ||||| || ||| | | ||| | | || Sbjct 27629 GGTTTCATACCGATATGTGGGGGTGATGGCATTAATGACAGTTTAAAAGAAATCGAGGGA 27570 Query 24973 AGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGACGATTTTAAGGTAACCATTCAC 25032 |||||| | || || ||||| || ||| || || || ||||||||||| |||| || Sbjct 27569 AGTTTTCAAGCACTACAGCGTTCATGCAGTGGTCGGGAAGATTTTAAGGTTTCCATCCAT 27510 Query 25033 GACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGCGTCTCCACTTGGAACGAGCCGTAC 25092 || || ||||| || | |||||||| || | ||| | ||| | ||||| || || || Sbjct 27509 GATCCTTGGGCTGCTTTACAGAAACCTCAAAGAGGTCTATCCTCCTGGAATGAACCTTAT 27450 Query 25093 AAAGGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCACACTTGAAGGTGCTG 25152 |||||||| ||||| ||||| ||| ||||| |||||| ||| |||||||| | | Sbjct 27449 AAAGGCAATTTTGGTCAATTGATGTCATTGAAACAAGCTAAACCAGACTTGAAGATTTTA 27390 Query 25153 GCGTCGATCGGCGGCTGGACCTTGTCAGATCCATTCTTTCACATGCATGACGCGACCGTG 25212 | || || || || ||||| || | ||||| ||||| | | ||| || | Sbjct 27389 CCATCAATTGGTGGGTGGACTTTAGCTGATCCTTTCTTCTTCTTCACTGATAAGAGTAAG 27330 Query 25213 CGTCAAACGTTCATCGATTCCGTCGAGGACTTTCTCTTGACTTGGAAGTTTTTCGACGGC 25272 || || || | || || || | || || || || || ||||| || || ||||| Sbjct 27329 CGACAGCGATTTGTAGAATCTGTTAAAGATTTCCTTTTAACCTGGAAATTCTTTGACGGT 27270 Query 25273 GTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCCAATCCTCACGTCGG 25325 || || |||||||||||||| || || || ||||| || || || || |||| Sbjct 27269 GTTGATATTGACTGGGAGTTCCCTGGTGGTAAAGGTGCTAACCCAGACCTCGG 27217 >seq219 Length=603346 Score = 196 bits (216), Expect = 5e-45 Identities = 577/880 (66%), Gaps = 22/880 (3%) Strand=Plus/Plus Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAA 146949 || ||||||||||||||||| || | || || ||||| | || | || || ||| Sbjct 377481 TGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATGTTTGATGTAAAA 377540 Query 146950 GGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCC 147009 || ||||| || |||||||| |||| |||||| || |||| || || ||||| ||| Sbjct 377541 GGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTGGGCATTGGCGCT 377600 Query 147010 ACCAACAATGAATTTCGCAGACCGTAC---GCACGGATGTTGTCCTTCAAAGTTTGCCAG 147066 | | | ||||| || ||||| | | ||| || || || || | || ||| Sbjct 377601 AATAGAAGGGAATTACGAAGACCATGCTTTGCA---ATTTTTTCTTTAAGAGCAGCCCAA 377657 Query 147067 TCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCG 147126 ||||| | | ||| || ||||||||| |||||||| || | ||| | || || Sbjct 377658 TCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCCCTTGGCTAGCA 377717 Query 147127 GGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCG 147186 ||||| || || | || |||| || || | || || || ||||| ||||||||| Sbjct 377718 GGACTTCCCTCGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCACAACTTGCCTCG 377777 Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246 ||||| || || || || ||||| ||||| | || || | | || | || ||| Sbjct 377778 AGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATTGCCTTCTCACTC 377837 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 || || || | | || ||| ||||| ||||| || || ||||| | |||| || || Sbjct 377838 TCATACGGTAATCTCATAAGAACAAATGCATCCGCTAATCCCTGAACGCCGATACCAATG 377897 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATA 147366 || | || || || | ||||| || || ||||| |||| ||||||| Sbjct 377898 GGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATAAAAGTTGACATCAATA 377957 Query 147367 ATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAA 147426 || ||||| || || | ||| |||||||| | ||| ||||| | |||||| | Sbjct 377958 ATTTTGTTCAGATTTTGTGTAACAGTTTTAGTTACTTCTTTCAGTTTTTTGAAATCGAAT 378017 Query 147427 GTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCC 147486 | || ||| || | ||| || | || || || || |||||||| ||||| Sbjct 378018 TTTTTGTTTTCAAC----AAACAT--ATTTAGAGCTATTGAGGCGAGATTGCACACGGCA 378071 Query 147487 GTCTCTTCGGCGTCGCTG--TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGA 147544 ||| || | || || || | || ||||| | |||| || |||||||| || Sbjct 378072 ACCTCATCTTC--CGATGTATATTCAACAATTTCAGTACACAAATTACTGCATTTGATAG 378129 Query 147545 CTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 147604 ||| | ||||| ||||| ||||| | || || || |||||| | |||||||| || Sbjct 378130 TTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCATGTATGGAG 378189 Query 147605 CGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGC--AGGTCCTGCGCTCGCACCCG 147662 || || |||||||||| ||||| || || | | | ||| || || || | Sbjct 378190 TACCAGTTTCGACTTGCGCTTCAATAAT--GGCTTTCCATAATATCTGAGCGCGTACTTG 378247 Query 147663 -CTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721 ||| | | | | | || | ||| || ||| |||||| ||||| || || |||| Sbjct 378248 CCTGAC-AAATCTGTTTTCTTGTTCATATTTCTCATACAACGCTTCAAATTCTTCACCGT 378306 Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAG 147761 | ||||| ||| || ||||| | ||| ||||||||||| Sbjct 378307 AACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAG 378346 >seq221 Length=486136 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | | | ||||| || || ||||||||||| | ||||| ||||| Sbjct 78361 AACTAAATGCAAGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTC 78420 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| ||||| | | |||| ||||||||||| |||||||| |||||||| || || Sbjct 78421 CAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTG 78480 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| || | | || | || |||| || || ||||| | || | ||||| Sbjct 78481 GATTTTTGCCTTTACATTCTCTATGGTGTCGGAGGGTTCGACTTCTAGGGTGATGGTTTT 78540 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | ||| |||||||| Sbjct 78541 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| | ||| | | |||||||||||||||||||| ||| | ||||| Sbjct 79268 CGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCG 79327 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | ||||| || | | |||| | || || |||||||| || || || ||||| Sbjct 79328 TCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTG 79387 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | |||||| | || || ||||| | || | Sbjct 79388 TCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTATG 79447 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || ||||||| ||||||||||| Sbjct 79448 GTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCAT 79482 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||||||| | ||||| |||||| | |||||||| | Sbjct 79061 GATTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCTAATTGTTTACCAGCG 79120 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | ||| ||||||||||| || |||||||| || || ||||| |||| Sbjct 79121 AAAATCAAACGTTGTTGATCTGGGGGGATGCCTTCCTTGTCTTGGATTTTAGCCTTCACG 79180 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | |||||| | ||||| || || | ||| | |||||||| || || ||||| Sbjct 79181 TTTTCAATAGTATCAGAAGGCTCTACCTCTAACGTTATAGTTTTACCCGTAAGGGTTTTA 79240 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 79241 ACAAAGATCTGCAT 79254 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | || | ||| | | || || || || ||||||||||| | || Sbjct 78577 ACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGT 78636 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| ||||| ||||| | | |||| ||||||||||| || ||||| || || Sbjct 78637 ACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACC 78696 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||||| ||| | | || | || || | || || ||||| | Sbjct 78697 TTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAG 78756 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| || || | ||| |||||||| Sbjct 78757 GGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | || | ||| | | || || || || ||||||||||| | || Sbjct 78805 ACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGT 78864 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| ||||| ||||| | | |||| ||||||||||| || ||||| || || Sbjct 78865 ACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACC 78924 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||||| ||| | | || | || || | || || ||||| | Sbjct 78925 TTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAA 78984 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| || || | ||| |||||||| Sbjct 78985 GGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 >seq131 Length=856804 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | |||| || |||||||||||||| || || ||| || |||||| Sbjct 308815 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308874 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || |||| | |||| || | ||| || ||||| || || ||||| || || Sbjct 308875 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308934 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | || |||| || || ||||| | || | |||||| Sbjct 308935 ATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTG 308994 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | ||||| | ||||||||||| Sbjct 308995 CCAGTTAAGGTTTTCACAAAAATCTGCAT 309023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | |||| || |||||||||||||| || || ||| || |||||| Sbjct 308131 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308190 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || |||| | |||| || | ||| || ||||| || || ||||| || || Sbjct 308191 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308250 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || | || |||| || || ||||| | || | |||||| Sbjct 308251 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308310 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | ||||||| || || ||||| Sbjct 308311 CCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | |||| || |||||||||||||| || || ||| || |||||| Sbjct 308359 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308418 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || |||| | |||| || | ||| || ||||| || || ||||| || || Sbjct 308419 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308478 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || | || |||| || || ||||| | || | |||||| Sbjct 308479 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308538 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | ||||||| || || ||||| Sbjct 308539 CCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | |||| || |||||||||||||| || || ||| || |||||| Sbjct 308587 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308646 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || |||| | |||| || | ||| || ||||| || || ||||| || || Sbjct 308647 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308706 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || | || |||| || || ||||| | || | |||||| Sbjct 308707 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308766 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | ||||||| || || ||||| Sbjct 308767 CCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476579058532200