Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq10 111 1e-19 seq221 95.1 1e-14 seq131 95.1 1e-14 >seq10 Length=3673010 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 99911 GATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGTTTTTATTAC 99970 || ||||||| ||| || || || || || | ||||||||||||| || | |||| Sbjct 115744 GACTGGCCGCGGAGTATGCGCCAGAAGCCCGAAGAGCTGGCCGAAGCCGGATTCTTTTAC 115685 Query 99971 ACCGGCAAAGGTGACAAAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAAGACTGGGAA 100030 |||||| | ||||| ||| |||||| ||| ||||||||||| ||||| |||||||| Sbjct 115684 ACCGGCCAGGGTGATAAAACTAAATGCTTTTTCTGCGACGGCGGTCTCAAGGACTGGGAG 115625 Query 100031 AGCACCGACGAGCCGTGGCATGAACACGCACGTTGGTTTGATCGCTGCACATACGTGCGG 100090 | ||||| || ||| | | ||||| |||||||| | | ||| | ||||| | | Sbjct 115624 AATGACGACGTCCCCTGGGAACAGCACGCTCGTTGGTTCAGTAGGTGCGCTTACGTTCAG 115565 Query 100091 CTTGTAAAGGG 100101 || || ||||| Sbjct 115564 CTCGTCAAGGG 115554 >seq221 Length=486136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 |||||||| |||||||| ||||| | ||||| |||||||| || ||||| ||||| Sbjct 79485 AAAATGCAGATTTTTGTAAAAACGCTTACTGGAAAGACCATAACTTTGGAAGTCGAACCT 79426 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| || ||| | || ||| |||||| |||||||| || | || ||| Sbjct 79425 TCGGATACTATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAGGGAATCCCACCAGAT 79366 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 || ||| | | || | ||| || |||||||| || || ||| | ||||||| Sbjct 79365 CAGCAACGATTGATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGATTAC 79306 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| |||||||| ||||| || ||| | || ||| | | || ||||| Sbjct 79305 AACATTCAAAAAGAGTCTACTCTTCATCTTGTTTTGCGTCTTCGCGGAGG 79256 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||||||||| | || || || || || || | || ||| || Sbjct 79254 ATGCAGATCTTTGTTAAAACCCTTACGGGTAAAACTATAACGTTAGAGGTAGAGCCTTCT 79195 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | ||||| ||||| ||||| |||||| | ||| |||||| Sbjct 79194 GATACTATTGAAAACGTGAAGGCTAAAATCCAAGACAAGGAAGGCATCCCCCCAGATCAA 79135 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| || || ||||||||||||||| | ||| | ||| |||||| Sbjct 79134 CAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTACAAC 79075 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || || || ||||||||||| ||| | ||| Sbjct 79074 ATCCAGAAGGAATCTACACTCCATCTCGTA 79045 >seq131 Length=856804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || ||||| |||||||| ||||| || |||||||| || || || ||||| |||||| Sbjct 309026 AAGATGCAGATTTTTGTGAAAACCTTAACTGGCAAAACGATCACTTTGGAAGTTGAACCC 308967 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| | | | | || ||| ||||| ||||| ||||| | ||| || Sbjct 308966 TCCGACACGATCGAGAATGTTAAAGCTAAAATCCAGGACAAGGAAGGAATTCCCCCAGAC 308907 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 || || || ||||| | ||| ||||| || ||||||||| || || |||||| Sbjct 308906 CAGCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTAC 308847 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| ||||| ||||| || || || || ||| | || || ||||||| Sbjct 308846 AACATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308797 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| |||||||| ||||| || || || || ||||| |||||| | Sbjct 308339 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308280 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | || ||| || || ||||| ||||| | ||| || || Sbjct 308279 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308220 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || ||||| | ||| ||||| || ||||||||| || || ||||||||| Sbjct 308219 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308160 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||| || || || || ||| | || || ||||||| Sbjct 308159 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308113 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| |||||||| ||||| || || || || ||||| |||||| | Sbjct 308567 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308508 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | || ||| || || ||||| ||||| | ||| || || Sbjct 308507 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308448 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || ||||| | ||| ||||| || ||||||||| || || ||||||||| Sbjct 308447 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308388 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||| || || || || ||| | || || ||||||| Sbjct 308387 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308341 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| |||||||| ||||| || || || || ||||| |||||| | Sbjct 308795 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308736 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | || ||| || || ||||| ||||| | ||| || || Sbjct 308735 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308676 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || ||||| | ||| ||||| || ||||||||| || || ||||||||| Sbjct 308675 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308616 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||| || || || || ||| | || || ||||||| Sbjct 308615 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402303146200160