Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 113 6e-19 >seq1 Length=6243310 Score = 113 bits (124), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || || ||||||||||| ||| |||| | ||| || | ||| || Sbjct 5820999 ATCTACAAAGTTCTGAAGCAGGTGCATCCCGACACCGGT-----ATC-TCAAGTAAGGCC 5821052 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || || ||||| || |||| ||||||| | |||| || Sbjct 5821053 ATGTCTATCATGAACTCCTTCGTGAACGATATATTCGAACGCATCGCCGCCGAAGCATCA 5821112 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || |||| || ||||||| | ||| || || | ||| | ||||| ||||| Sbjct 5821113 CGTCTCGCGCACTACAACAAGAGATCCACCATTACATCGAGGGAGGTTCAGACGTCCGTG 5821172 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | ||| |||||| |||||| |||||||||| || || |||| Sbjct 5821173 AGACTGTTGCTGCCCGGCGAGTTGGCCAAGCACGCCGTCAGTGAAGGGACCA 5821224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177290842333990