Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq131 118 1e-21 seq221 111 1e-19 seq64 102 7e-17 >seq131 Length=856804 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||||||||| | || ||| || | || || | |||||| || ||||| Sbjct 308833 TCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAG 308892 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | | ||||||||| | |||| | ||||||||| ||| ||| || || | | | Sbjct 308893 ATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGAT-TTTAGCTTTAACATT 308951 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||| | ||| || |||| ||||||||||| || || || |||||||| Sbjct 308952 CTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCAC 309011 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 309012 AAAAATCTGCAT 309023 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||||||||| | || ||| || | || || | |||||| || ||||| Sbjct 308149 TCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAG 308208 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | | ||||||||| | |||| | ||||||||| |||||| || | | | Sbjct 308209 ATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTC 308268 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||||| | ||| || |||| ||||||||||| || || || ||||| ||| Sbjct 308269 TCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACA 308328 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 308329 AAGATTTGCAT 308339 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||||||||| | || ||| || | || || | |||||| || ||||| Sbjct 308377 TCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAG 308436 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | | ||||||||| | |||| | ||||||||| |||||| || | | | Sbjct 308437 ATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTC 308496 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||||| | ||| || |||| ||||||||||| || || || ||||| ||| Sbjct 308497 TCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACA 308556 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 308557 AAGATTTGCAT 308567 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||||||||| | || ||| || | || || | |||||| || ||||| Sbjct 308605 TCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAG 308664 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | | ||||||||| | |||| | ||||||||| |||||| || | | | Sbjct 308665 ATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTC 308724 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||||| | ||| || |||| ||||||||||| || || || ||||| ||| Sbjct 308725 TCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACA 308784 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 308785 AAGATTTGCAT 308795 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||| ||||| | || ||| || | || || | |||||| || ||||| Sbjct 307921 TCCTTTTGAATGTTATAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAG 307980 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | | ||||||||| | |||| | ||||||||| |||||| || | | | Sbjct 307981 ATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTC 308040 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||||| | ||| || |||| ||||||||||| || || || ||||| ||| Sbjct 308041 TCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACA 308100 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 308101 AAGATTTGCAT 308111 >seq221 Length=486136 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 || ||||| || ||| |||||| || |||||||| || | | || || |||| ||| Sbjct 78362 ACTAAATGCAAGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCC 78421 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| ||||| |||| ||||| ||||| | ||| | || |||||||| | Sbjct 78422 AGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGG 78481 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 || ||| ||| | | | | | |||||| | ||| || || | ||||| ||||| Sbjct 78482 ATTTTTGCCTTTACATTCTCTATGGTGTCGGAGGGTTCGACTTCTAGGGTGATGGTTTTG 78541 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 78542 CCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | || || |||| |||||||||||||| ||||| Sbjct 78608 TCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAG 78667 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 |||| ||||| ||||| | ||| | | || ||||| ||| ||| || || | | | Sbjct 78668 ATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCTTGGAT-TTTCGCTTTTACATT 78726 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||| || || | ||||| ||||| || ||||| || || || Sbjct 78727 CTCAATTGTGTCTGAAGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGAC 78786 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 78787 GAAGATCTGCAT 78798 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | || || |||| |||||||||||||| ||||| Sbjct 78836 TCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAG 78895 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 |||| ||||| ||||| | ||| | | || ||||| ||| ||| || || | | | Sbjct 78896 ATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCTTGGAT-TTTCGCTTTTACATT 78954 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||| || || | ||||| ||||| || ||||| || || || Sbjct 78955 CTCAATTGTGTCTGAAGGTTCGACTTCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGAC 79014 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 79015 GAAGATCTGCAT 79026 >seq64 Length=1946208 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||||||| | ||| || ||| ||||||||||| ||||| |||| ||||| || | Sbjct 785713 CTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGATAAGGTACGACCA 785772 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||| || || || || |||||||| |||||||| || | |||| | |||||| Sbjct 785773 TCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGAATACCTTCCTTG 785832 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || |||||| ||| | | | | | ||||| | || ||||| | || || Sbjct 785833 TCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACCTCTAGGGTAATG 785892 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||||||||||| | || || || || ||||||||| || Sbjct 785893 GTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTTG 785931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450763199606600