Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq219 569 3e-157 seq149 109 8e-19 >seq219 Length=603346 Score = 569 bits (630), Expect = 3e-157 Identities = 1175/1745 (67%), Gaps = 66/1745 (4%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||||||| |||| ||||||||| || ||||||||||| | ||||| |||| || Sbjct 377166 GCTGGTTTTGTTCGTAAATAGTACATGCCAGTTTTCAGACCCATTTTCCATGCGTAAAAG 377225 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||||| ||| |||| |||| || || | ||| || || | || |||||| Sbjct 377226 TGTATGGATGTTAATTTTCCATAATTTGGTTCTGCGACATGTATGTTAAATGACTGACTT 377285 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 || || || || |||||||| || || ||||||| || | |||| | ||| ||| Sbjct 377286 TGGTCTATAAAGGCTCCTCTGTCCGCAGCCATTTGAATTGTTGTCTTGACGGAAATCTCC 377345 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG-GCTCGTATTTT--GAATGGAT 68631 || | || ||| | | | | |||| || | || | ||| || || ||||||| Sbjct 377346 CATACTGTTTTATACAGATCTCTGATGTCTTTGGGTATTGCTTCAATGTTCTGAATGGAA 377405 Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACA-ATTTTCTCTCCGTTAA 68690 ||| | |||||| | |||||| || || |||| ||| | || || | || || Sbjct 377406 CCATTGTTATGTATAATGAGATTCTTCATTTCTTCATCCCATAGATCCGCT-TGAGTCAA 377464 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | || | | ||||| | || || | |||||| || ||||| || |||| | ||| Sbjct 377465 ATCTGTTAAAAGATGATGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTA 377524 Query 68751 AATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGC 68810 ||| || ||| | ||||| | |||||||||||||| || |||||||| || || || Sbjct 377525 AATGTTTGATGTAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGC 377584 Query 68811 AGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTT 68870 ||| ||||| || || | | | ||| | ||||||||| || ||||| ||||| Sbjct 377585 AGTGGGCATTGGCGCTAATAGAAGGGAATTACGAAGACCATGCTTTGCAATTTTTTCTTT 377644 Query 68871 TAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||| ||||||||||||||| | ||| ||||| | |||||| |||||||| Sbjct 377645 AAGAGCAGCCCAATCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAAT 377704 Query 68931 TCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTC 68990 || | || ||| ||| | || || ||| || || || |||| || Sbjct 377705 CCCTTGGCTAGCAGGACTTCCCTCGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTC 377764 Query 68991 ACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCT 69048 |||||||||||| | ||||||||||| || ||||| || || | || ||| || || | Sbjct 377765 ACAACTTGCCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATAT 377824 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAA-AAGAATAAATGCATCTGCCAATCCCTG 69107 || ||||| ||| || | || |||| | | ||||| ||||||||| || |||||||| Sbjct 377825 TGC-CTTCTC-ACTCTCATACGG-TAATCTCATAAGAACAAATGCATCCGCTAATCCCTG 377881 Query 69108 AACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATA 69167 ||| || ||||| || || || ||| || |||| || ||| || || || | |||||| Sbjct 377882 AACGCCGATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATA 377941 Query 69168 ATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG 69227 | | || | ||| |||||||| || |||||| | || |||| || || || || Sbjct 377942 AAAGTTGACATCAATAATTTTGTTCAGATTTTGTGTAACAGTTTTAGTTACTTCTTTCAG 378001 Query 69228 TTTGAGAAAATCAAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATT 69287 ||| ||||| ||| | | | |||||||||||| || |||| || || ||||| Sbjct 378002 TTTTTTGAAATCGAATTTTTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGATT 378061 Query 69288 ACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACA 69347 || || || ||||||| || ||||| | || || ||||| | |||||| || Sbjct 378062 GCACACGGCAACCTCATCTTCCGATGTATATTCAACAATTTCAGTACACAAATTACTGCA 378121 Query 69348 TTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAAT 69407 ||||||||| || ||||||| |||||||| ||| ||||||| || || ||||| || || Sbjct 378122 TTTGATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCAT 378181 Query 69408 AAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATT 69467 | |||||||||||||| | || | ||| ||||| | |||||| | | | ||| Sbjct 378182 GTATGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCTTTCCATAATATCTGAGCGCG 378241 Query 69468 TATTACGGTCTTGTAA--CGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCA 69525 || | | || || | || |||| |||||||| ||| | | ||| ||||| Sbjct 378242 TACT--TGCCTGACAAATCTGTTTTCTTGTTCATATTTCTCATACAACGCTTCAAATTCT 378299 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 || || || ||||| | || ||||| | || |||||||||| ||| || || Sbjct 378300 TCACCGTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCA--GACTCCA-ATTT 378356 Query 69586 TCAT---CCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCT 69642 |||| || ||| | ||||| || | ||| || ||||| ||||| ||| | ||| Sbjct 378357 TCATTTCTCTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATAAAACAATTCT 378416 Query 69643 CTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCA 69702 |||| || |||||| |||||||| || || || | ||| | |||||| | |||||| Sbjct 378417 CTGGCCCTCACTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAAAAACTCGAAGATATCA 378476 Query 69703 GAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCT 69762 |||||||| || || | ||| || || | ||||||| |||||||| || || ||||| Sbjct 378477 GAATGCCACGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCCTTGATCA 378536 Query 69763 ATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCA 69822 | ||||| || ||||||||||| || |||| |||||||| | ||||| || ||||| Sbjct 378537 ACATATCTTGCTGTGTTATTATACACCCTCAACATCGGAACGAGTCCATTTGAAATACCA 378596 Query 69823 TTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCT 69882 ||||| |||| || ||| ||||| | || | ||| | |||| ||||| || Sbjct 378597 TTTGTACCAGCTATGTAAGTTCCTTTAGCTCTTATACAATGAATATGAAGACCAAT---- 378652 Query 69883 CCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTA 69942 ||| || || || || ||| Sbjct 378653 -----------------------------------------ATAAATTCCTTCAATACTA 378671 Query 69943 TCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTA 70002 || ||| ||||| || |||||||||| |||| ||| | | ||| | || Sbjct 378672 TCGTCTTTCATGCCAATAAGAAAACAGGATGACAACTGAGGTCTTGGAGTCGCAGCTGAG 378731 Query 70003 AATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATA 70062 || ||||||||| || || ||||| |||| ||||| | || ||||||||| | ||| Sbjct 378732 AACAATGTAGGACTCGCATGTGTGAAATATTTCTCAGACAACAAATTGTATGTGTTTATA 378791 Query 70063 GCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGT 70122 || | || ||||| | |||||||| || || |||||||||| |||||| || || Sbjct 378792 GCAGCATCAATATCTTTATCGTGAATTCCAATAGCAACACGCATCAGCATATGTTGTGGA 378851 Query 70123 CGTTC 70127 ||||| Sbjct 378852 CGTTC 378856 >seq149 Length=636072 Score = 109 bits (120), Expect = 8e-19 Identities = 157/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||||||| ||| | ||| ||| || || | || ||||| ||||| | ||| || Sbjct 239459 TCATCTCTAGAAATGAGTTCATTACTGAAAGTCAAACCGGGCATGAGACCTCTCTTCTTC 239400 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | ||| || || | ||||||| ||||| ||||| || ||||| || || ||||||||| Sbjct 239399 ATCCAGAAGATAGAAGCAAAACTACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATGCA 239340 Query 39761 ACAAGTCTCTCTCCGTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAGCT 39817 |||| | |||||| | | || | | | ||||||| | |||||||| || Sbjct 239339 ACAATGCGCTCTCCAAATGTGGCCGTCTTACTGGCAATCCACTGAAGGGCCCAATCTGCC 239280 Query 39818 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 |||||||||||||| || | || || |||||||| || || Sbjct 239279 TTCTTCTTTACACAGGGTAAAGTCTCAATAGCATTGAACAG 239239 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 39882 TAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCT 39941 ||| ||||||||| || | || ||||||||| || || | ||||| || || |||| Sbjct 239134 TAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACATTTTCCATAGCAATCT 239075 Query 39942 GAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCA 40001 | || || || || ||||| || ||||| | || || || | || | ||| | | Sbjct 239074 GGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGA 239015 Query 40002 AATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT 40061 ||| ||||| ||||| ||||| || |||||||| ||||||||||| |||||||| | Sbjct 239014 GATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTAATAAAGT 238955 Query 40062 ATTTTTCA 40069 | ||||| Sbjct 238954 GTCTTTCA 238947 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || |||| || ||||||||| | ||||| || || ||||||||||| |||||||| | | Sbjct 238709 TTAGATAAGTCAACTTCTTCAACAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGC 238650 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATG 40222 ||||||||| |||| || || || || |||||||||| | || |||| | || | | Sbjct 238649 CATATATCAGGATACTGGATGGGGAATATAACAAATCGACGAGGGTTTTCTCTCAGCAGG 238590 Query 40223 GGTTC 40227 ||||| Sbjct 238589 GGTTC 238585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686862476587800