Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq149 93.3 3e-14 seq23 82.4 6e-11 >seq149 Length=636072 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || |||||||||||||| || || || ||||| ||||| ||| | || || || Sbjct 238969 GTATTGGCGTTTTTTGCGGCATCAGATGGTATAGTAAATGAGAATCTCGTAGAACGCTTC 239028 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | || |||||||| | | || || |||| || ||||| || || ||||| || ||| Sbjct 239029 TCCCAGGAAGTTCAGGTGACTGAGGCGAGATGCTTCTATGGTTTCCAGATTGCTATGGAA 239088 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 ||| |||| ||||||||||| |||||||| ||||| || || Sbjct 239089 AATGTTCACTCGGAAATGTATTCACTTCTGATTGATACATATAT 239132 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||| || | | ||||| | || || || || |||| ||| ||||||| Sbjct 238592 TGCTGAGAGAAAACCCTCGTCGATTTGTTATATTCCCCATCCAGTATCCTGATATATGGC 238651 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 |||||||||| || ||| |||| || || ||||| | ||||||||||| || |||| | Sbjct 238652 AAATGTACAAGAAGGCAGAGGCTTCTTTCTGGACTGTTGAAGAAGTTGACTTATCTAAGG 238711 Query 43797 ACTTAGCACATTGGATTGC 43815 ||||| | | |||||| Sbjct 238712 --TTAGCCTAATTGATTGC 238728 >seq23 Length=1085908 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 41005 GACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTT 41064 ||||||||||| ||||||| |||| || | ||| | || ||||| | ||||||| Sbjct 506898 GACGTATAATAATGTGCGCATGGATTCCTGCTGACCTGAGCTTAATGGCTCTCCCACCTT 506839 Query 41065 GTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAA 41124 |||| | | || || || || | |||||| | ||| |||| ||||| |||| Sbjct 506838 GTCACTGCCTTGCACAATTCTATGTATCCAATGGAAAGCTGAGTTGTCTTTTGTACCAAA 506779 Query 41125 GATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGT 41184 || | || ||||| || || || || || || || || |||||| | || | || Sbjct 506778 GAAGTGCAGATATGGGTCTTGGAGTACCATTCAATATTGCCAGTTATTCATTGTTGACAC 506719 Query 41185 ATATGATTGCACACGTTACCAATTT 41209 ||||||||||||| | || ||||| Sbjct 506718 ATATGATTGCACATATCACAAATTT 506694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397429866646975