Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq219 159 4e-34 seq54 87.8 2e-12 >seq219 Length=603346 Score = 159 bits (176), Expect = 4e-34 Identities = 461/698 (66%), Gaps = 16/698 (2%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 || ||| |||| ||||||| ||| | |||||||| |||||||||| || | ||||| Sbjct 377513 TCGTCTTTGGTAAATGTTTGATGTAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTG 377572 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817 ||||||||||| || |||||||| || | | ||| ||||||||||| | || || Sbjct 377573 AGCGGTGGAGGCAGTGGGCATTGGCGCTAATAGAAGGGAATTACGAAGACCATGCT--TT 377630 Query 110818 G--ATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT-TGGTTTCACCTTCCCACAT 110874 | || ||| || ||| || |||| || | || || ||| | | |||||| Sbjct 377631 GCAATTTTTTCTTTAAGAGCAGCCCAATCCCA-AAGATCTGTGGGTGTTTTGTTCCACAT 377689 Query 110875 GTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTG 110934 || |||| || | ||||||| || ||| ||||| | || || ||| | Sbjct 377690 ATCGTACTGTAGAATCCCTTGGCTAGCAGGACTTCCCTCGTAAGTGCTGTAAACACCATC 377749 Query 110935 GGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACG 110994 || || || ||||| || ||||| || | ||| ||| || |||||||| || | Sbjct 377750 TCTCTCGGCTAACTCACAACTTGCCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTG 377809 Query 110995 AGCATTCA-TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACA 111052 ||| | | ||| |||| || ||| | | ||| || || || |||| || Sbjct 377810 CTGATTAAGTAATATTGCCTTC-TCACTCTCATACG-GTAATCTCATAAGAACAAATGCA 377867 Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 ||||| | || ||||| || | |||||| || |||||| |||||| || ||| ||| Sbjct 377868 TCCGCTAATCCCTGAACGCCGATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGCC 377927 Query 111113 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172 | || |||||||| || ||||| | | ||| ||||||| |||||| | || Sbjct 377928 TCCGGTACAGGATAAAAGTTGACATCAATAATTTTGTTCAGATTTTGTGTAACAGTTTTA 377987 Query 111173 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 111232 || | ||| | ||||||| |||| || | | | |||| ||| || | Sbjct 377988 GTTACTTCTTTCAGTTTTTTGAAATCGAATTT---TTTGTTTTCA---ACAAACATATTT 378041 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 || || ||||| || | |||||| || || |||||| | ||| || || | |||| Sbjct 378042 AGAGCTATTGAGGCGAGATTGCACACGGCAACCTCATCTTCCGATGTATATTCAACAATT 378101 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || ||||| || || | || || || || | ||| ||||| ||||| || |||| Sbjct 378102 TCAGTACACAAATTACTGCATTTGATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTA 378161 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 || ||||| ||||| |||||||| || || || || || Sbjct 378162 CATGCATCTTTGTACAGCATGTATGGAGTACCAGTTTC 378199 >seq54 Length=946213 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || |||||||| ||||| ||||| | || |||||| || || || || || | Sbjct 12944 CCAACAGCATCAATTTCATCGATGAACAGGATGCATGGTGCATGTTTCCGAGCCATAGAA 12885 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | ||| ||||||||| | ||| ||||| ||||||||||||| ||| | | || Sbjct 12884 AACATATCACGAACCCTTGAAGGACCAACACCGACAAACATCTCCAAAAATTCAGAACCA 12825 Query 11744 GAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 ||| || | ||||| || || || | ||| || || ||||| ||||| || || || Sbjct 12824 GAGACAGT-TATGAAAGGAACGTTGGCTTCGCCGGCTGTGGCTTTAGCGAGAAGTGTTTT 12766 Query 11803 TCCCGTACCTGG 11814 || ||||| || Sbjct 12765 ACCTGTACCAGG 12754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627989647092000