Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq219 116 5e-21 seq149 82.4 9e-11 seq54 82.4 9e-11 >seq219 Length=603346 Score = 116 bits (128), Expect = 5e-21 Identities = 435/672 (65%), Gaps = 20/672 (3%) Strand=Plus/Plus Query 118200 GGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCC 118259 || ||||| | ||||| || || | ||||| || |||||||| |||||||| || || Sbjct 377541 GGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTGGGCATTGGCGCT 377600 Query 118260 ATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT 118317 | |||||| ||||| ||||| | ||| | ||| ||| || ||||| |||| | Sbjct 377601 AATAGAAGGGAATTACGAAGACCATGCTTTGC--AATTTTTTCTTTAAGAGCAGCCCAAT 377658 Query 118318 CGTAGTTGAGCTTTGTCTCCCCC-TGCCACATATCAAACTGGAGGATACCTTGGGACGCT 118376 | | || || || | | ||||||||| |||| || || |||||| || Sbjct 377659 CCCAAA-GATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCCCTTGGCTAGCA 377717 Query 118377 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG 118436 || |||||| | || || || || ||| || || || | || |||||| Sbjct 377718 GGACTTCCCTCGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCACAACTTGCCTCG 377777 Query 118437 AGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAA 118496 || || ||| ||| || |||||||| || | ||| | | | |||| || Sbjct 377778 AGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATTGCCTTCTCACTC 377837 Query 118497 TCAAACGCGAGTCGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAAT 118555 ||| ||| | || || || || |||| ||||||| | || || || |||| ||||| Sbjct 377838 TCATACGGTAATCT-CATAAGAACAAATGCATCCGCTAATCCCTGAACGCCGATACCAAT 377896 Query 118556 TGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTATC 118612 || | ||| ||||||| || || || |||| || |||||||| || ||| Sbjct 377897 GGGCCTGTGTTTCATATTCGAGTTTTTCGC---CTCCGGTACAGGATAAAAGTTGACATC 377953 Query 118613 GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC 118672 |||| | || ||||||| || ||| || || | ||| | || |||| | |||| Sbjct 377954 AATAATTTTGTTCAGATTTTGTGTAACAGTTTTAGTTACTTCTTTCAGTTTTTTGAAATC 378013 Query 118673 AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACAC 118732 || | | | |||| ||| || || || || ||||| || ||||| ||||| Sbjct 378014 GAATTTTT---TGTTTTCA---ACAAACATATTTAGAGCTATTGAGGCGAGATTGCACAC 378067 Query 118733 AGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAAT 118792 | |||||| | || || || | |||||| || ||||| || | || || Sbjct 378068 GGCAACCTCATCTTCCGATGTATATTCAACAATTTCAGTACACAAATTACTGCATTTGAT 378127 Query 118793 GGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGG 118852 || || | || |||||||| ||| ||||||| ||||| ||||| ||||||||||| Sbjct 378128 AGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCATGTATGG 378187 Query 118853 CGTCCCCGTCTC 118864 || || || || Sbjct 378188 AGTACCAGTTTC 378199 >seq149 Length=636072 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 130046 GAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAA 130105 || ||||||||||| ||| || ||| ||||||||||| | |||||||| |||||| Sbjct 239450 GAAATGAGTTCATTACTGAAAGTCAAACCGGGCATGAGACCTCTCTTCTTCATCCAGAAG 239391 Query 130106 ATCGCA-CAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACG 130164 || | | ||||| | ||||||||||| ||||| || ||| || || |||| | || Sbjct 239390 ATAGAAGCAAAACTA-CCAGAGAAGAAAATCCCTTCAACAGCAGCAAATGCAACAATGCG 239332 Query 130165 CTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTC 130224 ||| |||| | | | ||| | ||| ||||| | ||||| | ||||| |||| Sbjct 239331 CTCTCCAAATGTGGCCGTCTTACTGGCAATCCACTGAAGGGCCCAATCTGCCTTCTTCTT 239272 Query 130225 GATACACGGGACGGTCT 130241 | ||| || | |||| Sbjct 239271 TACACAGGGTAAAGTCT 239255 >seq54 Length=946213 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 14235 TACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTT 14294 |||| || || ||||||||||||||||| | ||| |||||| || || || || | Sbjct 12946 TACCAACAGCATCAATTTCATCGATGAACAGGATGCATGGTGCATGTTTCCGAGCCATAG 12887 Query 14295 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 14354 ||| ||||| || || || | ||| ||||| ||||||||||||| ||| | | Sbjct 12886 AAAACATATCACGAACCCTTGAAGGACCAACACCGACAAACATCTCCAAAAATTCAGAAC 12827 Query 14355 CGGA-ACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 | || ||| | ||||| || ||||| | ||| || || ||||| ||||| || || Sbjct 12826 CAGAGACAGT-TATGAAAGGAACGTTGGCTTCGCCGGCTGTGGCTTTAGCGAGAAGTGTT 12768 Query 14414 TTCCCCGTCCCTGG 14427 || || || || || Sbjct 12767 TTACCTGTACCAGG 12754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618393494276200