Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq219 248 1e-60 >seq219 Length=603346 Score = 248 bits (274), Expect = 1e-60 Identities = 751/1148 (65%), Gaps = 33/1148 (3%) Strand=Plus/Minus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || ||||||||| ||| |||| | |||| ||| | | || | ||| |||||| Sbjct 378604 GGTACAAATGGTATTTCAAATGGACTCGTTCCGATGTTGAGGGTGTATAATAACACAGCA 378545 Query 104573 CGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 | ||||| |||||| || | || |||| | |||| ||||| | ||||| Sbjct 378544 AGATATGTTGATCAAGGGGGCAATAAACGTCCGGGAGCATTCGCCATCTATGTGGAGCCG 378485 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 ||||| | |||||| | ||||| | || || ||| ||| | || || | | Sbjct 378484 TGGCATTCTGATATCTTCGAGTTTTTGGATTTAAAGAAGAACACAGGAAAGGAAGAAGTG 378425 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || | | || | || | ||||| ||||| |||||| | ||||||||||| |||||| Sbjct 378424 AGGGCCAGAGAATTGTTTTATGCTCTATGGATACCAGATTTGTTCATGAAGAGGGTTGAG 378365 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 | || |||||| ||| | ||||| | || || || || | ||| Sbjct 378364 AGAAATGAAAATTGGAGTCTGATGTGTCCCCATAACTGTCCAGGGCTTTATGATTGTTAC 378305 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAG--------GTCGGGCGA 104861 ||||| || |||||||| | || || || || ||||| ||| ||| | Sbjct 378304 GGTGAAGAATTTGAAGCGTTGTATGAGAAATATGAACAAGAAAACAGATTTGTCAGGCAA 378245 Query 104862 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 | || || | ||| | || | |||||||| ||| | | | ||| ||| |||| Sbjct 378244 GTACG-CGCT--CAGAT----AT-TATGGAAAGCCATTATTGAAGCGCAAGTCGAAACTG 378193 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 |||| ||||||||||| |||||||| || |||||| ||| ||||||||||| ||| | | Sbjct 378192 GTACTCCATACATGCTGTACAAAGATGCATGTAACAGAAAAAGTAATCAAAAAAATCTTG 378133 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 105041 | ||||| | ||| | ||||| ||||| | |||| |||| |||||||| Sbjct 378132 GAACTATCAAATGCAGTAATTTGTGTACTGAAATTGTTGAATATACATCGGAAGATGAGG 378073 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 105101 || ||||| || ||||| ||||| ||||| | || ||| || | ||||| | Sbjct 378072 TTGCCGTGTGCAATCTCGCCTCAATAGCTCTAAATATGTTTGTTGA-----AAACAAA-A 378019 Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAG 105161 ||| |||| ||||||| | ||||| || |||||||| || |||| || |||| | Sbjct 378018 AATTCGATTTCAAAAAACTGAAAGAAGTAACTAAAACTGTTACACAAAATCTGAACAAAA 377959 Query 105162 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 |||||||| || ||||| || || | || || || ||||||| |||| | | Sbjct 377958 TTATTGATGTCAACTTTTATCCTGTACCGGAGGCGAAAAACTCGAATATGAAACACAGGC 377899 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTT-TGTCGCCACGCATTT 105280 | |||||| |||| |||||||| | ||||||| ||| ||||| || || | | | Sbjct 377898 CCATTGGTATCGGCGTTCAGGGATTAGCGGATGCATTTGTTCTTATGAGATTAC-CGTAT 377840 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || || | || | | | ||| || |||||||| || || ||| ||| || Sbjct 377839 GAGAGTGAGAAGGCAATATTACTTAATCAGCAAATATTTGAAACGATCTATTACGGTGCG 377780 Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 || ||||| |||| ||||| || ||| |||||| || || | ||||| | Sbjct 377779 CTCGAGGCAAGTTGTGAGTTAGCCGAGAGAGATGGTGTTTACAGCACTTACGAGGGAAGT 377720 Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGA-CCAAGCTTCACTA 105459 || ||| |||||| | || || | ||||||| |||| | | ||| || | Sbjct 377719 CCTGCTAGCCAAGGGATTCTACAGTACGATATGT-GGAACAAAACACCCACAGATCTTTG 377661 Query 105460 CGACTGGGAAGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 || |||| ||||| || ||| || ||| || | ||||||||||| || || Sbjct 377660 GGATTGGGCTGCTCTTAAAGAAAAAATTGCAA--AGCATGGTCTTCGTAATTCCCTTCTA 377603 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 | || |||||||| || ||||||||||| ||||| | || |||||||||| |||||| Sbjct 377602 TTAGCGCCAATGCCCACTGCCTCCACCGCTCAAATACTAGGAAATAATGAATCGTTTGAA 377543 Query 105578 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 || | || | ||||| || | ||| || | | ||||||||| | |||||| Sbjct 377542 CCTTTTACATCAAACATTTACCAAAGACGAGTTTTGTCTGGAGAGTTTCAAGTGGTCAAC 377483 Query 105638 AAGCATCT 105645 | ||||| Sbjct 377482 CATCATCT 377475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583221466349800