Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq221 131 1e-25 seq131 122 5e-23 seq64 98.7 6e-16 seq10 82.4 5e-11 >seq221 Length=486136 Score = 131 bits (144), Expect = 1e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| || | ||| ||||| ||| ||||||||||| ||||| ||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | |||||| || ||||| || || || || || || || || Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| |||||| ||| ||| | |||||| | ||| || || || || Sbjct 79376 ATTCCCTCTTTGTCT-TGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGAC 79434 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||||| ||||| || || || || | |||||| |||||||||||||| ||||| Sbjct 79435 TTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTTGAT 79488 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| ||||| | || ||||| | || |||||| || ||||| || || ||| Sbjct 78344 CCGCCTCTGAGACGGAGAACTAAATGCAAGGTAGACTCCTTCTGGATGTTGTAGTCAGAA 78403 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||| || || ||||| ||||| || | |||||||||||| || || Sbjct 78404 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCTGGAGGG 78463 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||||| || || | || ||||| | || || Sbjct 78464 ATGCCTTCCTTGTCTTGGAT-TTTTGCCTTTACATTCTCTATGGTGTCGGAGGGTTCGAC 78522 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || || || || || || || |||||||| Sbjct 78523 TTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| || ||||| || ||||| || || |||||||| || ||||||| || || Sbjct 78595 ATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTG 78654 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||||| ||||| || | |||||||||||| || || | || || |||||| ||| || Sbjct 78655 CTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCTTGGAT-TT 78713 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | ||| || | |||||||||| || ||||| | ||| || ||||| || | Sbjct 78714 TCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAGGGTGATGGTTTTGCCAG 78773 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || |||||||| Sbjct 78774 TCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| || ||||| || ||||| || || |||||||| || ||||||| || || Sbjct 78823 ATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTG 78882 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||||| ||||| || | |||||||||||| || || | || || |||||| ||| || Sbjct 78883 CTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCTTGGAT-TT 78941 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | ||| || | |||||||||| || ||||| | ||| || ||||| || | Sbjct 78942 TCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAAGGTGATGGTTTTGCCAG 79001 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || |||||||| Sbjct 79002 TCAAGGTCTTGACGAAGATCTGCAT 79026 >seq131 Length=856804 Score = 122 bits (134), Expect = 5e-23 Identities = 162/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || |||||||||||||| ||||| || || || || | ||||| Sbjct 308815 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308874 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | || || |||||||| || | | ||| ||||| || || | ||| |||||||| | Sbjct 308875 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308934 Query 34618 ATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| | |||||| | || ||||| | || ||||||| || |||||||| Sbjct 308935 AT-TTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308993 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT-TGTA 34716 || ||||| |||||||||||||||||||| ||||| |||| Sbjct 308994 GCCAGTTAAGGTTTTCACAAAAATCTGCATCTTGATCTGTA 309034 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||||||||| || || || || | ||||| | || || |||||||| Sbjct 307921 TCCTTTTGAATGTTATAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAG 307980 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | | ||| ||||| || || | ||| |||||||| |||| || | |||||| | Sbjct 307981 ATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATC-TTAGCTTTAACATT 308039 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || ||||| | || ||||||| || |||||||| || ||||| ||||| || Sbjct 308040 CTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTAC 308099 Query 34695 AAAAATCTGCAT 34706 ||| || ||||| Sbjct 308100 AAAGATTTGCAT 308111 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || |||||||||||||| ||||| || || || || | ||||| Sbjct 308131 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308190 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | || || |||||||| || | | ||| ||||| || || | ||| |||||||| | Sbjct 308191 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308250 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | |||||| | || ||||| | || ||||||| || |||||||| Sbjct 308251 ATC-TTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308309 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| ||||| || ||||| Sbjct 308310 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || |||||||||||||| ||||| || || || || | ||||| Sbjct 308359 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308418 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | || || |||||||| || | | ||| ||||| || || | ||| |||||||| | Sbjct 308419 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308478 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | |||||| | || ||||| | || ||||||| || |||||||| Sbjct 308479 ATC-TTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308537 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| ||||| || ||||| Sbjct 308538 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || |||||||||||||| ||||| || || || || | ||||| Sbjct 308587 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308646 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | || || |||||||| || | | ||| ||||| || || | ||| |||||||| | Sbjct 308647 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308706 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | |||||| | || ||||| | || ||||||| || |||||||| Sbjct 308707 ATC-TTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308765 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| ||||| || ||||| Sbjct 308766 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 >seq64 Length=1946208 Score = 98.7 bits (108), Expect = 6e-16 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536 || || |||||||| | |||||| | ||| | || ||||||||||| || || || Sbjct 785698 TCACCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCG 785757 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 || | || || | ||||| | |||||| || || ||||| || ||||| || || || Sbjct 785758 GATAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGT 785817 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCC 34656 || | || ||||||||| |||||| |||| || ||||| | ||| Sbjct 785818 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCA 785877 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 || || | ||| || |||||||| |||| || || || ||||||||||| ||| || Sbjct 785878 ACCTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTTGGTT 785934 >seq10 Length=3673010 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 47138 GATTGGCCTCGTGGTTTGCGTCAGAGACCAAAAGAGTTAGCGGACGCGGGCTTCTTTTAT 47197 || ||||| || || |||| |||| || ||||| | || || || || |||||||| Sbjct 115744 GACTGGCCGCGGAGTATGCGCCAGAAGCCCGAAGAGCTGGCCGAAGCCGGATTCTTTTAC 115685 Query 47198 ACTGGTGAAGGTGATAAAACGAAGTGTTATTATTGTGATGGTGGTCTGAGAGATTGGAAC 47257 || || | ||||||||||| || || | || || || || ||||| | || ||| | Sbjct 115684 ACCGGCCAGGGTGATAAAACTAAATGCTTTTTCTGCGACGGCGGTCTCAAGGACTGGGAG 115625 Query 47258 GAAGAAGATATACCTTGGGAGGAGCACGCTCGTTGGTT 47295 | || || | || ||||| |||||||||||||||| Sbjct 115624 AATGACGACGTCCCCTGGGAACAGCACGCTCGTTGGTT 115587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314708906037035