Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq221 116 3e-21 seq131 84.2 2e-11 >seq221 Length=486136 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| |||||||| ||||| |||||||| || || || | || |||||| Sbjct 79485 AAAATGCAGATTTTTGTAAAAACGCTTACTGGAAAGACCATAACTTTGGAAGTCGAACCT 79426 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || | || | ||| || ||| ||||| |||||||| || | || | Sbjct 79425 TCGGATACTATTGAAAAT--GTTAAAGCCAAAATTCAAGACAAAGAGGGAATCCCACCAG 79368 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || || ||||| |||||||||||||| |||| ||| | | ||||||| Sbjct 79367 ATCAGCAACGATTGATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGATT 79308 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||||||| ||| | ||| | ||||||||| | || || || Sbjct 79307 ACAACATTCAAAAAGAGTCTACTCTTCATCTTGTTTTGCGTCTTCGCGGAGG 79256 >seq131 Length=856804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| |||||||||||||| | ||||| ||| || || | || || ||| | Sbjct 309026 AAGATGCAGATTTTTGTGAAAACCTTAACTGGCAAAACGATCACTTTGGAAGTTGAACCC 308967 Query 27847 ACCGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| ||| | ||| || ||| ||||| ||||| ||||| |||| | Sbjct 308966 TCCGACACGATCGAGAAT--GTTAAAGCTAAAATCCAGGACAAGGAAGGAATTCCCCCAG 308909 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| | | || |||||||| || || || || || | ||||| | |||| |||| Sbjct 308908 ACCAGCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATT 308849 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||| ||||| || || |||| ||||| Sbjct 308848 ACAACATTCAAAAGGAATCAACCCTGCACTTGGT 308815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355839001491165