Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq131 178 3e-39 seq221 140 8e-28 seq64 131 4e-25 seq148 91.5 3e-13 >seq131 Length=856804 Score = 178 bits (196), Expect = 3e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | ||| || || || || ||||| ||||||||||| | ||||| | ||| Sbjct 307896 TCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGACAGGGTGCGTCC 307955 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||||||| || |||||||| | || ||||| || |||| ||||||||| Sbjct 307956 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308015 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||| ||| || || ||||| ||||| ||| |||||| || | |||||| Sbjct 308016 GTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308075 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || | || |||||||| | ||||| Sbjct 308076 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Score = 174 bits (192), Expect = 4e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | ||| || || || || ||||| ||||| ||||| | ||||| | ||| Sbjct 308124 TCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCC 308183 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||||||| || |||||||| | || ||||| || |||| ||||||||| Sbjct 308184 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308243 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||| ||| || || ||||| ||||| ||| |||||| || | |||||| Sbjct 308244 GTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308303 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || | || |||||||| | ||||| Sbjct 308304 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 174 bits (192), Expect = 4e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | ||| || || || || ||||| ||||| ||||| | ||||| | ||| Sbjct 308352 TCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCC 308411 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||||||| || |||||||| | || ||||| || |||| ||||||||| Sbjct 308412 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308471 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||| ||| || || ||||| ||||| ||| |||||| || | |||||| Sbjct 308472 GTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308531 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || | || |||||||| | ||||| Sbjct 308532 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 174 bits (192), Expect = 4e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | ||| || || || || ||||| ||||| ||||| | ||||| | ||| Sbjct 308580 TCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCC 308639 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||||||| || |||||||| | || ||||| || |||| ||||||||| Sbjct 308640 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308699 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||| ||| || || ||||| ||||| ||| |||||| || | |||||| Sbjct 308700 GTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308759 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || | || |||||||| | ||||| Sbjct 308760 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | ||| || || || || ||||| ||||| ||||| | ||||| | ||| Sbjct 308808 TCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCC 308867 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||||||| || |||||||| | || ||||| || |||| ||||||||| Sbjct 308868 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308927 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||||||||| || ||| || || ||||| ||||| ||| |||||| || | |||||| Sbjct 308928 GTCCTGGATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308987 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || || | || || ||||| | |||||| || Sbjct 308988 CGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTT 309026 >seq221 Length=486136 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| |||||||| ||||||||||| ||||| ||||| | ||| || | ||| || ||| Sbjct 79274 ACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCGTCCTCC 79333 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | || || ||||| ||||| | ||||| || || || || | ||| || ||||| || Sbjct 79334 AATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGA 79393 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || ||| || ||||| || || || || ||| || || | ||| || |||||| Sbjct 79394 ATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTATGGTCTTT 79453 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || |||||||| | ||||||||| Sbjct 79454 CCAGTAAGCGTTTTTACAAAAATCTGCATTTT 79485 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| || || | ||| || | || |||||||||||||| || Sbjct 78374 GTAGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCA 78433 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| || || |||||||| ||||| | ||||||||||| ||||| ||| || Sbjct 78434 GCAAAGATCAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTT 78493 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || |||||||| ||| ||| || || || ||||| || || || || | ||| Sbjct 78494 ACATTCTCTATGGTGTCGGAGGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTC 78553 Query 211098 TTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 78554 TTGACGAAGATCTGCAT 78570 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| | || ||| || || || || || || || || |||||||| || || | ||| || Sbjct 78577 ACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGT 78636 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||||||||| || || ||||| || || |||||||| ||||| | || Sbjct 78637 ACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACC 78696 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||| || ||| || || || || ||||| || ||| || || || Sbjct 78697 TTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAG 78756 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | ||||| || || | |||||| Sbjct 78757 GGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| | || ||| || || || || || || || || |||||||| || || | ||| || Sbjct 78805 ACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGT 78864 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||||||||| || || ||||| || || |||||||| ||||| | || Sbjct 78865 ACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACC 78924 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||| || ||| || || || || ||||| || ||| || || | Sbjct 78925 TTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAA 78984 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | ||||| || || | |||||| Sbjct 78985 GGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||| || || || || || || || || |||||||| || || | || || Sbjct 79033 ACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGT 79092 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| | || || || ||||| || | |||||||| || || || | || Sbjct 79093 ACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATGCC 79152 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||| || ||||||||||| || || ||||| || ||||| | Sbjct 79153 TTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCTACCTCTAA 79212 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || || ||||| | |||||| Sbjct 79213 CGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 >seq64 Length=1946208 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | ||||| || | || || || ||||| || || || || | | ||| | Sbjct 785709 AAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGATAAGGTACG 785768 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||| || || || ||||| || | || || || || || |||| ||||| Sbjct 785769 ACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGAATACCTTC 785828 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||| |||||||| || || || ||||||||||||||| |||||||| || || Sbjct 785829 CTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACCTCTAGGGT 785888 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || ||||| || ||||| || || | ||||||||| Sbjct 785889 AATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTT 785930 >seq148 Length=419512 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || ||||| ||||| | ||| || ||||| || || || ||| || || ||||||||| Sbjct 143740 TGCTGGTCCGGAGGGATTCCCTCTTTGTCTTGTATTTTAGCTTTGACATTCTCGATGGTG 143799 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 || ||| ||| |||||||| ||||| || || |||||||| || || || || | |||| Sbjct 143800 TCCGAGGGTTCGACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATCTGC 143859 Query 211113 ATTTT 211117 || || Sbjct 143860 ATCTT 143864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159071875429175